Pre_GI: BLASTP Hits

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Query: NC_009664:1434974:1448147 Kineococcus radiotolerans SRS30216, complete genome

Start: 1448147, End: 1449682, Length: 1536

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010617:92000:9443594435959401506Kocuria rhizophila DC2201, complete genomeputative amino acid transporter1e-161569
NC_012803:1094679:1112770111277011144311662Micrococcus luteus NCTC 2665, complete genomeamino acid transporter1e-124446
NC_010397:4387500:4402170440217044037381569Mycobacterium abscessus chromosome Chromosome, complete sequencePutative amino acid transporter8e-85314
NC_009338:5161886:5164774516477451662041431Mycobacterium gilvum PYR-GCK chromosome, complete genomeamino acid permease-associated protein1e-68261
NC_010617:92000:9665896658981991542Kocuria rhizophila DC2201, complete genomeputative amino acid transporter2e-67257
NC_018750:6237875:6253545625354562550231479Streptomyces venezuelae ATCC 10712, complete genomeamino acid transporter, APC family2e-54213
NC_016109:6816000:6836139683613968376921554Kitasatospora setae KM-6054, complete genomeputative amino acid transporter7e-2099
NC_014103:2635695:2640702264070226420961395Bacillus megaterium DSM319 chromosome, complete genomeamino acid permease family protein2e-0757.8
NC_014019:2661000:2662028266202826634221395Bacillus megaterium QM B1551 chromosome, complete genomeamino acid permease family protein2e-0757.8
NC_015145:1045264:1047727104772710490761350Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeamino acid transporter6e-0755.8
NC_005362:1870620:1890385189038518917821398Lactobacillus johnsonii NCC 533, complete genomeamino acid transporter9e-0755.5
NC_013504:1648551:1663848166384816652451398Lactobacillus johnsonii FI9785 chromosome, complete genomeamino acid permease2e-0654.7
NC_008530:1775841:1794199179419917955961398Lactobacillus gasseri ATCC 33323, complete genomeAmino acid transporter5e-0653.1