Pre_GI: BLASTP Hits

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Query: NC_009512:2782000:2790861 Pseudomonas putida F1, complete genome

Start: 2790861, End: 2791274, Length: 414

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:5867782:588514258851425885579438Pseudomonas putida ND6 chromosome, complete genomepeptidyl-tRNA hydrolase domain-containing protein9e-66248
NC_020211:4168189:418734241873424187755414Serratia marcescens WW4, complete genomepetidyl-tRNA hydrolase, ribosome-attached3e-35147
NC_008740:3259962:326165432616543262067414Marinobacter aquaeolei VT8, complete genomeClass I peptide chain release factor4e-35146
NC_008781:2883968:288678728867872887191405Polaromonas naphthalenivorans CJ2, complete genomeClass I peptide chain release factor4e-35146
NC_009663:738846:760730760730761152423Sulfurovum sp. NBC37-1, complete genomepeptide chain release factor 28e-34142
NC_010506:774455:774455774455774868414Shewanella woodyi ATCC 51908, complete genomeClass I peptide chain release factor1e-25115
NC_007347:3612918:361869036186903619034345Ralstonia eutropha JMP134 chromosome 1, complete sequencehypothetical protein2e-24110
NC_010511:4696868:469806346980634698488426Methylobacterium sp. 4-46 chromosome, complete genomeclass I peptide chain release factor1e-23108
NC_014541:475350:521390521390521815426Ferrimonas balearica DSM 9799 chromosome, complete genomeClass I peptide chain release factor4e-22103
NC_013960:1484824:149698114969811497409429Nitrosococcus halophilus Nc4 chromosome, complete genomeClass I peptide chain release factor7e-22102
NC_014315:2834000:284507328450732845498426Nitrosococcus watsoni C-113 chromosome, complete genomeClass I peptide chain release factor1e-21101
NC_014962:826563:843778843778844206429Isosphaera pallida ATCC 43644 chromosome, complete genomeClass I peptide chain release factor2e-1787.8
NC_016114:3275004:327754532775453277970426Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeclass I peptide chain release factor4e-1063.5
NC_014364:4416467:442095344209534421366414Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeClass I peptide chain release factor1e-0961.6
NC_008820:2595500:259999125999912600422432Prochlorococcus marinus str. MIT 9303, complete genomeClass I peptide chain release factor1e-0961.6
NC_009482:2051890:206094720609472061381435Synechococcus sp. RCC307 chromosome, complete genomeprotein chain release factor B2e-0857.8
NC_005070:2308363:232486823248682325302435Synechococcus sp. WH 8102, complete genomehypothetical protein2e-0754.7
NC_012669:2399649:240649924064992406936438Beutenbergia cavernae DSM 12333, complete genomeClass I peptide chain release factor3e-0753.5
NC_007516:2383097:240162724016272402058432Synechococcus sp. CC9605, complete genomehypothetical protein5e-0753.1
NC_010407:410918:418256418256418678423Clavibacter michiganensis subsp. sepedonicus chromosome, completehypothetical protein2e-0650.8