Pre_GI: BLASTP Hits

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Query: NC_009512:2108686:2116570 Pseudomonas putida F1, complete genome

Start: 2116570, End: 2117847, Length: 1278

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4790482:4798363479836347996401278Pseudomonas putida ND6 chromosome, complete genomeRuBisCO-like protein0835
NC_010552:2454776:2466372246637224676491278Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceRibulose-bisphosphate carboxylase2e-168592
NC_011959:131800:1381551381551394111257Thermomicrobium roseum DSM 5159, complete genomeribulose bisphosphate carboxylase7e-119427
NC_007963:3574000:3583014358301435843031290Chromohalobacter salexigens DSM 3043, complete genomeRibulose-bisphosphate carboxylase9e-115414
NC_012791:2052923:2083169208316920844401272Variovorax paradoxus S110 chromosome 1, complete genomeRibulose-bisphosphate carboxylase7e-107387
NC_011894:2503639:2503639250363925048831245Methylobacterium nodulans ORS 2060, complete genomeribulose-1,5-bisphosphate carboxylase/oxygenase large subunit5e-104378
NC_009464:2523092:2525602252560225268401239Uncultured methanogenic archaeon RC-I, complete genomeribulose 1,5-bisphosphate carboxylase (RuBisCO), large subunit4e-59229
NC_013926:1037681:1039257103925710405191263Aciduliprofundum boonei T469 chromosome, complete genomeribulose bisphosphate carboxylase, type III4e-57222
NC_015499:417896:4324174324174337061290Thermodesulfobium narugense DSM 14796 chromosome, complete genomeribulose bisphosphate carboxylase, type III1e-52207
NC_000961:828416:8484378484378497291293Pyrococcus horikoshii OT3, complete genomemethionine sulfoxide reductase A4e-51202
NC_013741:1390823:1390823139082313921661344Archaeoglobus profundus DSM 5631, complete genomeribulose bisphosphate carboxylase, type III3e-51202
NC_018012:2159814:2171326217132621726781353Thiocystis violascens DSM 198 chromosome, complete genomeribulose 1,5-bisphosphate carboxylase, large subunit3e-51202
NC_009033:996616:1018390101839010197211332Staphylothermus marinus F1, complete genomeribulose bisphosphate carboxylase, large chain7e-51201
NC_013156:1240926:1243967124396712452441278Methanocaldococcus fervens AG86, complete genomeribulose bisphosphate carboxylase, type III7e-50198
NC_019940:929071:9535929535929548991308Thioflavicoccus mobilis 8321 chromosome, complete genomeribulose 1,5-bisphosphate carboxylase, large subunit2e-49196
NC_012883:1421644:1439609143960914409521344Thermococcus sibiricus MM 739, complete genomeRibulose bisphosphate carboxylase6e-46185
NC_018876:307464:3215023215023229411440Methanolobus psychrophilus R15 chromosome, complete genomeribulose bisphosphate carboxylase6e-35148
NC_008314:1559102:1561463156146315629231461Ralstonia eutropha H16 chromosome 2, complete sequenceribulose bisphosphate carboxylase large chain2e-33144
NC_014931:3886405:3894109389410938954941386Variovorax paradoxus EPS chromosome, complete genomeRibulose-bisphosphate carboxylase7e-31135
NC_014501:3210323:3223935322393532253531419Cyanothece sp. PCC 7822 chromosome, complete genomeRibulose-bisphosphate carboxylase2e-24114
NC_018012:3401854:3418287341828734194231137Thiocystis violascens DSM 198 chromosome, complete genomeribulose 1,5-bisphosphate carboxylase, large subunit3e-24113
NC_011729:1496848:1503225150322515046431419Cyanothece sp. PCC 7424 chromosome, complete genomeribulose bisophosphate carboxylase6e-24112
NC_008344:811386:8223528223528237731422Nitrosomonas eutropha C91, complete genomeRibulose-bisphosphate carboxylase5e-24112
NC_011726:1665315:1677472167747216788901419Cyanothece sp. PCC 8801, complete genomeRibulose-bisphosphate carboxylase5e-24112
NC_010296:4384000:4390428439042843918431416Microcystis aeruginosa NIES-843, complete genomeribulose bisophosphate carboxylase1e-23111
NC_011761:1904637:1906975190697519083541380Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeribulose bisphosphate carboxylase2e-23110
NC_011206:1792621:1792621179262117940001380Acidithiobacillus ferrooxidans ATCC 53993, complete genomeRibulose-bisphosphate carboxylase2e-23110
NC_014844:2721746:2747332274733227487231392Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeRibulose-bisphosphate carboxylase3e-23110
NC_007520:903799:9169299169299183441416Thiomicrospira crunogena XCL-2, complete genomeRibulose-bisphosphate carboxylase4e-22106
NC_016884:3219030:3241044324104432422941251Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeribulose-bisphosphate carboxylase6e-22105
NC_015757:2343193:2365207236520723664571251Sulfobacillus acidophilus TPY chromosome, complete genome2,3-diketo-5-methylthiopentyl-1-phosphate enolase6e-22105
NC_015581:1791658:1805368180536818067801413Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeRibulose bisphosphate carboxylase large chain7e-21102
NC_014212:319815:3283783283783294691092Meiothermus silvanus DSM 9946 chromosome, complete genomeribulose-1,5-bisphosphate carboxylase/oxygenase large subunit1e-20101
NC_008319:1727686:1750450175045017518621413Synechococcus sp. CC9311, complete genomeribulose bisphosphate carboxylase, large subunit5e-2099.4
NC_019940:3089884:3093271309327130944251155Thioflavicoccus mobilis 8321 chromosome, complete genomeribulose 1,5-bisphosphate carboxylase, large subunit1e-1998.2
NC_007335:1820332:1829415182941518308271413Prochlorococcus marinus str. NATL2A, complete genomemethionine sulfoxide reductase A2e-1997.1
NC_008819:541000:5492785492785506901413Prochlorococcus marinus str. NATL1A, complete genomeRibulose bisphosphate carboxylase, large chain2e-1997.1
NC_005042:513931:5244545244545258661413Prochlorococcus marinus subsp. marinus str. CCMP1375, completemethionine sulfoxide reductase A2e-1894
NC_013946:879199:8851018851018861981098Meiothermus ruber DSM 1279 chromosome, complete genomeribulose-bisphosphate carboxylase4e-1892.8
NC_005072:508827:5190875190875205021416Prochlorococcus marinus subsp. pastoris str. CCMP1986, completemethionine sulfoxide reductase A6e-1892.4
NC_008817:539349:5496025496025510171416Prochlorococcus marinus str. MIT 9515, complete genomeRibulose bisphosphate carboxylase, large chain6e-1892.4
NC_007577:503440:5137335137335151481416Prochlorococcus marinus str. MIT 9312, complete genomeRibulose-bisphosphate carboxylase6e-1892.4
NC_008816:518895:5291755291755305901416Prochlorococcus marinus str. AS9601, complete genomeRibulose bisphosphate carboxylase, large chain6e-1892.4
NC_009840:544816:5551115551115565261416Prochlorococcus marinus str. MIT 9215, complete genomeRibulose bisphosphate carboxylase, large chain6e-1892.4
NC_009091:493302:5036045036045050191416Prochlorococcus marinus str. MIT 9301, complete genomeRibulose bisphosphate carboxylase, large chain8e-1892