Pre_GI: BLASTP Hits

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Query: NC_009480:31412:35841 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 35841, End: 36227, Length: 387

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009953:4240000:424148542414854241835351Salinispora arenicola CNS-205 chromosome, complete genomePadR-like family transcriptional regulator2e-1684
NC_014391:4672105:468658046865804687002423Micromonospora aurantiaca ATCC 27029 chromosome, complete genometranscriptional regulator PadR family protein2e-1580.9
NC_013929:10109680:101127321011273210113073342Streptomyces scabiei 87.22 chromosome, complete genomePadR family transcriptional regulator5e-1373.2
NC_019673:4687289:470970847097084710022315Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-1272
NC_013595:702482:718974718974719303330Streptosporangium roseum DSM 43021, complete genomePadR family transcriptional regulator3e-1063.9
NC_008536:812882:813307813307813660354Solibacter usitatus Ellin6076, complete genometranscriptional regulator, PadR-like family5e-0959.7
NC_008536:3282971:329226432922643292611348Solibacter usitatus Ellin6076, complete genometranscriptional regulator, PadR-like family2e-0857.8
NC_014328:3823902:382855038285503828879330Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative PadR family transcriptional regulator6e-0856.2
NC_018664:2638102:264078026407802641118339Clostridium acidurici 9a chromosome, complete genometranscriptional regulator, PadR family3e-0650.8