Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:608500:614523 Pseudomonas mendocina ymp, complete genome

Start: 614523, End: 615770, Length: 1248

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012881:1802000:1822804182280418240061203Desulfovibrio salexigens DSM 2638, complete genomerestriction modification system DNA specificity domain protein2e-89329
NC_016047:2480921:2491021249102124922981278Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetype I restriction-modification enzyme, S subunit1e-57224
NC_008313:1:94609460107281269Ralstonia eutropha H16 chromosome 1, complete sequenceType I restriction-modification system specificity subunit3e-45182
NC_004463:5540924:5557859555785955591601302Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein3e-43176
NC_013592:446092:4545344545344557241191Dickeya dadantii Ech586, complete genomerestriction modification system DNA specificity domain protein2e-39163
NC_012108:2194251:2194251219425121955311281Desulfobacterium autotrophicum HRM2, complete genomeHsdS24e-39162
NC_013161:4093322:4102957410295741043271371Cyanothece sp. PCC 8802, complete genomerestriction modification system DNA specificity domain protein8e-35148
NC_008346:2579756:2600348260034826015891242Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeRestriction endonuclease S subunits-like protein6e-34145
NC_016002:1048420:1074827107482710761731347Pseudogulbenkiania sp. NH8B, complete genometype I restriction-modification system specificity subunit1e-30134
NC_008146:20047:2866128661298961236Mycobacterium sp. MCS, complete genometype I restriction-modification system specificity subunit3e-29129
NC_008705:27434:3457634576358111236Mycobacterium sp. KMS, complete genometype I restriction-modification system specificity subunit3e-29129
NC_010003:1126800:1142463114246311437521290Petrotoga mobilis SJ95, complete genomerestriction modification system DNA specificity domain2e-28127
NC_009665:2602000:2614480261448026157631284Shewanella baltica OS185 chromosome, complete genomerestriction modification system DNA specificity subunit4e-28125
NC_009076:75535:915959159592542948Burkholderia pseudomallei 1106a chromosome I, complete sequenceRestriction endonuclease S subunits4e-26119
NC_016816:3974895:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S3e-25116
NC_016816:3952000:3974895397489539762801386Pantoea ananatis LMG 5342, complete genometype I restriction-modification system specificity subunit S3e-25116
NC_019771:3237000:3256940325694032582681329Anabaena cylindrica PCC 7122, complete genomerestriction modification system DNA specificity domain protein2e-20100
NC_002607:81452:8916089160905871428Halobacterium sp. NRC-1, complete genomeRmeS3e-2099.8
NC_010364:84900:9158891588930151428Halobacterium salinarum R1, complete genometype I site-specific deoxyribonuclease subunit rmeS3e-2099.8
NC_013861:3341955:3344087334408733454871401Legionella longbeachae NSW150, complete genometype I restriction-modification system (methylase_S)3e-1996.3
NC_016620:781995:7957407957407969781239Bacteriovorax marinus SJ, complete genomeputative type I restriction enzyme specificity protein2e-1894
NC_018876:587094:6087896087896100811293Methanolobus psychrophilus R15 chromosome, complete genometype I restriction-modification system, S subunit3e-1893.2
NC_016816:1137904:1156994115699411586911698Pantoea ananatis LMG 5342, complete genometype I restriction modification DNA specificity domain protein4e-1892.8
NC_005363:3562205:3576704357670435779571254Bdellovibrio bacteriovorus HD100, complete genometype I restriction-modification system, S subunit1e-1791.7
NC_016943:2054688:2067149206714920683541206Blastococcus saxobsidens DD2, complete genomeputative Restriction modification system DNA specificity domain3e-1789.7
NC_013799:1:1649316493177731281Hydrogenobacter thermophilus TK-6, complete genomerestriction endonuclease S subunit8e-1788.6
NC_017161:1:1655416554178341281Hydrogenobacter thermophilus TK-6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-1788.6
NC_013716:3512950:3521977352197735235931617Citrobacter rodentium ICC168, complete genomeputative type I restriction modification system HsdS component1e-1688.2
NC_011138:3881446:3898916389891638999981083Alteromonas macleodii 'Deep ecotype', complete genometype I site-specific deoxyribonuclease1e-1585.1
NC_015865:229883:2407132407132420051293Thermococcus sp. 4557 chromosome, complete genomerestriction modification system DNA specificity subunit2e-1584
NC_009656:44500:8547085470868641395Pseudomonas aeruginosa PA7 chromosome, complete genometype I restriction-modification system subunit S5e-1582.4
NC_015562:755785:7636407636407649591320Methanotorris igneus Kol 5 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein2e-1377.4
NC_011726:3051408:307105630710563071772717Cyanothece sp. PCC 8801, complete genomerestriction modification system DNA specificity domain protein1e-1274.7
NC_015587:90539:9754297542988611320Hydrogenobaculum sp. SHO chromosome, complete genomerestriction modification system DNA specificity domain protein2e-1273.9
NC_020411:90538:9754197541988601320Hydrogenobaculum sp. HO, complete genomerestriction modification system DNA specificity domain containing protein2e-1273.9
NC_015557:90503:9750697506988251320Hydrogenobaculum sp. 3684 chromosome, complete genomerestriction modification system DNA specificity domain protein2e-1273.9
NC_014408:1340016:1352967135296713542741308Methanothermobacter marburgensis str. Marburg chromosome, completetype I restriction-modification enzyme, subunit S1e-1171.6
NC_006510:372826:3786463786463796861041Geobacillus kaustophilus HTA426, complete genometype I restriction-modification system S subunit4e-1169.7
NC_015320:1690047:1699124169912417003861263Archaeoglobus veneficus SNP6 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein4e-1169.7
NC_019977:1353332:1361527136152713627771251Methanomethylovorans hollandica DSM 15978, complete genomerestriction endonuclease S subunit7e-1168.9
NC_007645:5160133:5182397518239751836171221Hahella chejuensis KCTC 2396, complete genomeRestriction endonuclease S subunit1e-1067.8
NC_016051:1005188:1012531101253110138171287Thermococcus sp. AM4 chromosome, complete genomeType I restriction-modification system specificity subunit S3e-1066.6
NC_013508:3188978:3232492323249232338171326Edwardsiella tarda EIB202, complete genometype I restriction modification DNA specificity domain protein4e-1066.2
NC_013440:3813132:3832106383210638333771272Haliangium ochraceum DSM 14365, complete genomerestriction modification system DNA specificity domain protein5e-1065.9
NC_014008:1463795:1483479148347914848221344Coraliomargarita akajimensis DSM 45221 chromosome, complete genomerestriction modification system DNA specificity domain protein9e-1065.1
NC_010498:4856011:4859524485952448608101287Escherichia coli SMS-3-5, complete genometype I restriction modification DNA specificity domain-containing protein2e-0963.9
NC_009328:814530:8393888393888409171530Geobacillus thermodenitrificans NG80-2 chromosome, complete genometype I specificity subunit HsdS2e-0963.9
NC_014414:1104386:1119888111988811210871200Parvularcula bermudensis HTCC2503 chromosome, complete genometype I restriction-modification system specificity subunit7e-0962.4
NC_003272:3275413:3277624327762432789071284Nostoc sp. PCC 7120, complete genometype I restriction-modification enzyme S subunit8e-0962
NC_012962:4591295:4596402459640245975351134Photorhabdus asymbiotica, complete genometype i restriction enzyme ecobi specificity protein (s protein (s.ecobi)1e-0861.2
NC_017506:1660072:1665738166573816670211284Marinobacter adhaerens HP15 chromosome, complete genometype I site-specific restriction-modification system, S subunit1e-0861.2
NC_009434:281474:2873472873472886121266Pseudomonas stutzeri A1501, complete genometype I restriction-modification system, S subunit2e-0860.8
NC_015572:4618467:4638997463899746404661470Methylomonas methanica MC09 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein3e-0860.1
NC_015164:493159:5474975474975487861290Bacteroides salanitronis DSM 18170 chromosome, complete genomerestriction modification system DNA specificity domain6e-0858.9
NC_015663:2090442:2112256211225621135961341Enterobacter aerogenes KCTC 2190 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-0858.5
NC_008740:257434:2748562748562762411386Marinobacter aquaeolei VT8, complete genomerestriction modification system DNA specificity domain1e-0758.2
NC_015416:621513:6339436339436351991257Methanosaeta concilii GP-6 chromosome, complete genometype I restriction-modification enzyme, S subunit1e-0758.2
NC_011831:2213306:2212048221204822133191272Chloroflexus aggregans DSM 9485, complete genomerestriction modification system DNA specificity domain protein1e-0758.2
NC_015703:3880903:3901289390128939026681380Runella slithyformis DSM 19594 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein1e-0757.8
NC_009033:755226:7610247610247624151392Staphylothermus marinus F1, complete genomerestriction modification system DNA specificity domain2e-0757.4
NC_009049:1934398:1962148196214819635181371Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencerestriction modification system DNA specificity domain2e-0757
NC_014206:411143:4175314175314187451215Geobacillus sp. C56-T3 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein6e-0755.8
NC_016803:2431672:2450504245050424517211218Desulfovibrio desulfuricans ND132 chromosome, complete genomerestriction modification system DNA specificity domain-containing protein8e-0755.5
NC_009925:2240871:2242037224203722437581722Acaryochloris marina MBIC11017, complete genometype I restriction-modification system S subunit1e-0654.7
NC_020541:2551539:2562003256200325637091707Rhodanobacter sp. 2APBS1, complete genomerestriction endonuclease S subunit2e-0654.3
NC_014814:2588628:2629651262965126309191269Mycobacterium sp. Spyr1 chromosome, complete genomerestriction endonuclease S subunit2e-0653.5
NC_007925:4060635:4066717406671740680991383Rhodopseudomonas palustris BisB18, complete genometype I restriction enzyme StySPI specificity protein4e-0653.1