Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2442981 Pseudomonas mendocina ymp, complete genome

Start: 2442981, End: 2444243, Length: 1263

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:3088866:3114001311400131152631263Pseudomonas aeruginosa DK2 chromosome, complete genomeouter membrane efflux protein0634
NC_010170:4800000:4832089483208948333301242Bordetella petrii, complete genomehypothetical protein9e-65247
NC_015733:5955467:5955467595546759567591293Pseudomonas putida S16 chromosome, complete genomeCzcC family heavy metal RND efflux outer membrane protein3e-62239
NC_002947:6123608:6137536613753661387891254Pseudomonas putida KT2440, complete genomeheavy metal RND efflux outer membrane protein, CzcC family7e-58224
NC_008800:3955284:3953989395398939552871299Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,outer membrane efflux protein2e-37156
NC_009659:1923925:1943190194319019444971308Janthinobacterium sp. Marseille chromosome, complete genomeouter membrane cation efflux protein1e-33144
NC_009138:1544835:1549474154947415507811308Herminiimonas arsenicoxydans, complete genomeOuter membrane efflux protein4e-33142
NC_009138:519965:5333325333325346391308Herminiimonas arsenicoxydans, complete genomeputative outer membrane cation efflux system protein czcC4e-33142
NC_009659:1050532:1051594105159410529011308Janthinobacterium sp. Marseille chromosome, complete genomeouter membrane efflux protein2e-32140
NC_009832:3703202:3725271372527137265301260Serratia proteamaculans 568, complete genomeouter membrane efflux protein2e-32140
NC_010087:376918:3974663974663987581293Burkholderia multivorans ATCC 17616 chromosome 3, completeouter membrane efflux protein1e-32140
NC_013446:2820000:2858404285840428596361233Comamonas testosteroni CNB-2, complete genomeouter membrane efflux protein2e-24113
NC_008347:174000:1846931846931859371245Maricaulis maris MCS10, complete genomeouter membrane protein4e-1789.7
NC_016602:173314:1883521883521897161365Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceouter membrane protein8e-1788.6
NC_011206:2040000:2065582206558220668921311Acidithiobacillus ferrooxidans ATCC 53993, complete genomeouter membrane efflux protein6e-0858.9
NC_008607:11663:2176721767231071341Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequenceouter membrane efflux protein3e-0756.6
NC_012982:711122:7396207396207408581239Hirschia baltica ATCC 49814, complete genomeouter membrane efflux protein3e-0756.6