Pre_GI: BLASTP Hits

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Query: NC_009092:3732390:3754528 Shewanella loihica PV-4, complete genome

Start: 3754528, End: 3755532, Length: 1005

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011566:4309151:4322502432250243235781077Shewanella piezotolerans WP3, complete genomeRegulatory protein, LysR8e-118423
NC_014217:4550544:458732945873294588243915Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, LysR family2e-1067
NC_006371:1411335:144096814409681441873906Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical transcriptional regulator, LysR family7e-0961.6
NC_008061:2368517:239821323982132399139927Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, LysR family1e-0861.2
NC_010625:1602191:162819216281921629166975Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, LysR family1e-0860.8
NC_007511:3512100:353444735344473535373927Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LysR family5e-0858.9
NC_009997:2069894:208252920825292083422894Shewanella baltica OS195, complete genometranscriptional regulator, LysR family5e-0858.9
NC_016901:2070121:208311620831162084009894Shewanella baltica OS678 chromosome, complete genomeLysR family transcriptional regulator5e-0858.9
NC_008541:2119883:213613321361332137020888Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional regulator, LysR family1e-0757.4
NC_015424:2316228:231775323177532318688936Aeromonas veronii B565 chromosome, complete genomeLysR family transcriptional regulator2e-0756.6
NC_011566:4309151:432149443214944322474981Shewanella piezotolerans WP3, complete genomeRegulatory protein, LysR2e-0756.6
NC_015424:3277292:328098932809893281870882Aeromonas veronii B565 chromosome, complete genomeNodD transcription activator-like protein7e-0755.1
NC_010501:4989455:498945549894554990393939Pseudomonas putida W619, complete genometranscriptional regulator, LysR family8e-0755.1