Pre_GI: BLASTP Hits

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Query: NC_009092:1127000:1148846 Shewanella loihica PV-4, complete genome

Start: 1148846, End: 1150633, Length: 1788

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012725:97681:1054901054901072831794Burkholderia glumae BGR1 plasmid bglu_4p, complete sequenceEco57I restriction endonuclease0766
NC_009484:857384:8793188793188810391722Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein1e-150533
NC_011386:136223:1678401678401696391800Oligotropha carboxidovorans OM5, complete genomerestriction methylase1e-134480
NC_008060:3155133:3180922318092231826581737Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceN-6 DNA methylase4e-68259
NC_017322:1260526:1275292127529212768961605Sinorhizobium meliloti BL225C chromosome, complete genomeN-6 DNA methylase5e-55216
NC_017030:5558429:5593992559399255957881797Corallococcus coralloides DSM 2259 chromosome, complete genomemodification methylase6e-55216
NC_013768:1802313:1807158180715818090681911Listeria monocytogenes 08-5923, complete genomeN-6 DNA methylase8e-34145
NC_013766:1835964:1840427184042718423371911Listeria monocytogenes 08-5578 chromosome, complete genomeN-6 DNA methylase8e-34145
NC_015953:3860467:3870642387064238721801539Streptomyces sp. SirexAA-E chromosome, complete genomeEco57I restriction endonuclease4e-32140
NC_009256:176403:1966311966311981541524Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein3e-31137
NC_015850:2048251:2125548212554821270981551Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein4e-29130
NC_014150:3139852:3156576315657631577931218Brachyspira murdochii DSM 12563 chromosome, complete genomeN-6 DNA methylase3e-27123
NC_009767:4819000:4826386482638648288902505Roseiflexus castenholzii DSM 13941, complete genome1e-26121
NC_015436:270820:2775642775642791171554Spirochaeta coccoides DSM 17374 chromosome, complete genomeSite-specific DNA-methyltransferase (adenine-specific)2e-23111
NC_014614:2643203:2661613266161326631421530Clostridium sticklandii, complete genomeputative Modification methylase PstI (Adenine-specific methyltransferase PstI) (M.PstI)3e-22107
NC_012030:246000:2646182646182667022085Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completeN-6 DNA methylase3e-1687.4
NC_019792:3446895:3458347345834734612862940Natronobacterium gregoryi SP2 chromosome, complete genometype I restriction-modification system methyltransferase subunit5e-1686.7
NC_012796:1600600:1618327161832716199881662Desulfovibrio magneticus RS-1, complete genomemodification methylase1e-1585.5
NC_014219:3188128:3205971320597132080942124Bacillus selenitireducens MLS10 chromosome, complete genomeN-6 DNA methylase5e-1376.6
NC_014729:800892:8085928085928107512160Halogeometricum borinquense DSM 11551 chromosome, complete genometype i restriction-modification system methyltransferase subunit1e-1172
NC_007426:1489677:1497341149734115011173777Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme2e-1171.2
NC_011830:2811441:2814044281404428160652022Desulfitobacterium hafniense DCB-2, complete genomeN-6 DNA methylase2e-1171.2
NC_007907:1732500:1736677173667717382361560Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1170.9
NC_013222:1536203:1543931154393115469513021Robiginitalea biformata HTCC2501, complete genometype II restriction enzyme, methylase subunit6e-1169.7
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase2e-1067.8
NC_016943:21364:3013730137318761740Blastococcus saxobsidens DD2, complete genomeN-6 adenine-specific DNA methylase3e-1067
NC_020156:2750000:2753388275338827566093222Nonlabens dokdonensis DSW-6, complete genometype II restriction enzyme, methylase7e-1066.2
NC_015383:368500:3777753777753809273153Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequencetype I restriction-modification system, M subunit, putative1e-0965.1
NC_011891:3369170:3379581337958133824332853Anaeromyxobacter dehalogenans 2CP-1, complete genomeprotein of unknown function DUF4503e-0963.9
NC_014150:2146887:2158447215844721596791233Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein4e-0963.9
NC_014014:117925:1331701331701346001431Mycoplasma crocodyli MP145 chromosome, complete genomehypothetical protein4e-0963.5
NC_012918:3558500:3569102356910235707901689Geobacter sp. M21 chromosome, complete genomehypothetical protein5e-0963.2
NC_015577:3776295:3790930379093037924321503Treponema azotonutricium ZAS-9 chromosome, complete genomeN-6 DNA methylase family protein1e-0862
NC_012225:1497934:1508209150820915094951287Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-0861.6
NC_013730:4118355:4127499412749941309783480Spirosoma linguale DSM 74, complete genomeEco57I restriction endonuclease3e-0860.8
NC_014150:2146887:2155160215516021564751316Brachyspira murdochii DSM 12563 chromosome, complete genome3e-0860.5
NC_013926:1270173:1273330127333012763172988Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF4507e-0859.7
NC_018866:1328623:1343063134306313461493087Dehalobacter sp. DCA chromosome, complete genomeType II restriction enzyme, methylase subunit7e-0859.3
NC_014616:862084:8725788725788741701593Bifidobacterium bifidum S17 chromosome, complete genometype II methyltransferase8e-0859.3
NC_018867:10238:3975439754464676714Dehalobacter sp. CF chromosome, complete genomeDNA methylase1e-0758.9
NC_015510:4065753:4074953407495340768181866Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeN-6 DNA methylase1e-0758.9
NC_008826:84218:8595485954873211368Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein2e-0758.5
NC_015671:557720:5670945670945698802787Cellvibrio gilvus ATCC 13127 chromosome, complete genomehypothetical protein2e-0758.2
NC_009434:695582:7593117593117617162406Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0758.2
NC_009073:696663:7050637050637065771515Pyrobaculum calidifontis JCM 11548, complete genomeN-6 DNA methylase2e-0757.8
NC_008787:31999:5460554605583393735Campylobacter jejuni subsp. jejuni 81-176, complete genometype II restriction-modification enzyme2e-0757.8
NC_016906:1565868:1575349157534915782312883Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative DNA methylase3e-0757.4
NC_008023:1070986:1103910110391011111607251Streptococcus pyogenes MGAS2096, complete genomeSuperfamily II DNA and RNA helicase3e-0757.4
NC_017161:282500:2902062902062944324227Hydrogenobacter thermophilus TK-6 chromosome, complete genomehypothetical protein4e-0757
NC_013799:282500:2902162902162944424227Hydrogenobacter thermophilus TK-6, complete genomeputative restriction endonuclease4e-0757
NC_003912:30265:4469944699484723774Campylobacter jejuni RM1221, complete genometype II restriction-modification enzyme6e-0756.6
NC_017281:30261:4469744697481193423Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative type IIS restriction /modification enzyme, N-terminal protein5e-0756.6
NC_012225:1497934:1513591151359115149071317Brachyspira hyodysenteriae WA1, complete genomehypothetical protein5e-0756.6
NC_014655:424486:4443124443124461501839Leadbetterella byssophila DSM 17132 chromosome, complete genomeN-6 DNA methylase6e-0756.2
NC_013440:625867:6293716293716311101740Haliangium ochraceum DSM 14365, complete genomeSite-specific DNA-methyltransferase (adenine- specific)7e-0756.2
NC_014150:2146887:2162432216243221639521521Brachyspira murdochii DSM 12563 chromosome, complete genome1e-0655.8
NC_009523:379705:3830913830913865553465Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein1e-0655.5
NC_014844:2056943:2078959207895920807221764Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeN-6 DNA methylase1e-0655.5
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase1e-0655.5
NC_010730:1724443:1726422172642217300513630Sulfurihydrogenibium sp. YO3AOP1, complete genomehypothetical protein1e-0655.1
NC_009464:2881771:2896993289699328991642172Uncultured methanogenic archaeon RC-I, complete genomeputative DNA methyltransferase1e-0655.1
NC_014217:2760898:2782553278255327840011449Starkeya novella DSM 506 chromosome, complete genomeSite-specific DNA-methyltransferase (adenine-specific)2e-0654.7
NC_009633:3055413:3097513309751330997592247Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein2e-0654.3
NC_013595:8603188:8626853862685386309294077Streptosporangium roseum DSM 43021, complete genomeputative type II DNA modification enzyme4e-0653.5
NC_013894:464907:4743644743644777233360Thermocrinis albus DSM 14484 chromosome, complete genomehypothetical protein5e-0653.1
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase9e-0652.4
NC_017375:1498000:1498187149818715019603774Helicobacter pylori 83 chromosome, complete genometype II restriction-modification enzyme9e-0652.4