Pre_GI: BLASTP Hits

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Query: NC_009089:965959:985481 Clostridium difficile 630, complete genome

Start: 985481, End: 985891, Length: 411

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:905347:924867924867925277411Clostridium difficile BI1, complete genomeuniversal stress protein1e-72271
NC_013316:891782:912705912705913115411Clostridium difficile R20291, complete genomeputative universal stress protein1e-72271
NC_014328:4073714:409387340938734094283411Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative universal stress protein7e-37152
NC_021182:1346261:134626113462611346680420Clostridium pasteurianum BC1, complete genomeuniversal stress protein UspA-like protein2e-35147
NC_015589:1439794:144344914434491443868420Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeUspA domain-containing protein7e-1165.9
NC_020450:875757:879305879305879730426Lactococcus lactis subsp. lactis IO-1 DNA, complete genomehypothetical protein2e-0961.2
NC_009464:225400:228091228091228540450Uncultured methanogenic archaeon RC-I, complete genomeputative universal stress protein A8e-0958.9
NC_020244:3856526:387029238702923870738447Bacillus subtilis XF-1, complete genomephosphate starvation protein2e-0754.7
NC_000964:4015005:403081540308154031261447Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0754.7
NC_009464:1531847:153306315330631533512450Uncultured methanogenic archaeon RC-I, complete genomeuniversal stress protein A2e-0754.3
NC_014658:417537:439777439777440208432Methanothermus fervidus DSM 2088 chromosome, complete genomeuspa domain protein3e-0753.9
NC_014479:3825195:385247438524743852920447Bacillus subtilis subsp. spizizenii str. W23 chromosome, completephosphate starvation protein (universal stress protein A family)3e-0753.5
NC_014976:2024364:203866220386622039108447Bacillus subtilis BSn5 chromosome, complete genomephosphate starvation protein4e-0753.5
NC_019964:861000:8754668754668777392274Halovivax ruber XH-70, complete genomeKef-type K+ transport system, membrane component4e-0753.5
NC_007907:5056036:505921850592185059640423Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-0752.4
NC_017195:3815491:383100838310083831454447Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeuniversal stress family protein1e-0651.6
NC_019974:1020500:103280710328071033241435Natronococcus occultus SP4, complete genomeuniversal stress protein UspA-like protein2e-0651.6
NC_011830:923424:962180962180962602423Desulfitobacterium hafniense DCB-2, complete genomeUspA domain protein2e-0651.2
NC_015172:3160249:320742232074223207847426Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeUspA domain-containing protein2e-0651.2
NC_015676:208393:209268209268209723456Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUspA domain-containing protein2e-0651.2