Pre_GI: BLASTP Hits

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Query: NC_009089:965959:982712 Clostridium difficile 630, complete genome

Start: 982712, End: 983200, Length: 489

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:905347:922100922100922588489Clostridium difficile BI1, complete genomeflavodoxin6e-90328
NC_013315:895500:912281912281912811531Clostridium difficile CD196 chromosome, complete genomeflavodoxin6e-90328
NC_013316:891782:909896909896910426531Clostridium difficile R20291, complete genomeputative flavodoxin6e-90328
NC_007484:2746078:276071227607122761314603Nitrosococcus oceani ATCC 19707, complete genomeFlavoprotein WrbA2e-0962
NC_013960:1778411:179732417973241797926603Nitrosococcus halophilus Nc4 chromosome, complete genomeflavoprotein WrbA4e-0960.8
NC_007511:3103999:310940031094003109954555Burkholderia sp. 383 chromosome 2, complete sequenceFlavodoxin/nitric oxide synthase3e-0857.4
NC_002488:1638946:165238816523881652966579Xylella fastidiosa 9a5c, complete genometryptophan repressor binding protein5e-0857
NC_014500:1862000:191089119108911911445555Dickeya dadantii 3937 chromosome, complete genomeMultimeric flavodoxin WrbA1e-0755.5
NC_003295:659837:680092680092680664573Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRP REPRESSOR BINDING PROTEIN HOMOLOG4e-0753.9
NC_009832:1280938:129767312976731298224552Serratia proteamaculans 568, complete genomeflavodoxin/nitric oxide synthase5e-0753.5
NC_020063:2785652:279994227999422800538597Enterobacteriaceae bacterium strain FGI 57, complete genomeNAD(P)H:quinone oxidoreductase, type IV7e-0753.1
NC_009464:1397739:140416614041661404699534Uncultured methanogenic archaeon RC-I, complete genomepredicted redox-active protein (CxxC motif)8e-0753.1
NC_014310:1130344:113470811347081135262555Ralstonia solanacearum PSI07 megaplasmid, complete sequenceflavodoxin/nitric oxide synthase9e-0752.8
NC_012912:2901021:290972829097282910282555Dickeya zeae Ech1591, complete genomeflavodoxin/nitric oxide synthase2e-0651.6
NC_012880:2871480:287691128769112877465555Dickeya dadantii Ech703, complete genomeflavodoxin/nitric oxide synthase3e-0651.2