Pre_GI: BLASTP Hits

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Query: NC_009089:873295:897764 Clostridium difficile 630, complete genome

Start: 897764, End: 898180, Length: 417

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:805867:833367833367833783417Clostridium difficile BI1, complete genomehypothetical protein9e-72268
NC_013315:796313:823813823813824229417Clostridium difficile CD196 chromosome, complete genomehypothetical protein9e-72268
NC_013316:796895:821353821353821769417Clostridium difficile R20291, complete genomehypothetical protein9e-72268
NC_015565:2027279:203809720380972038522426Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehypothetical protein4e-28123
NC_018515:595500:595530595530595943414Desulfosporosinus meridiei DSM 13257 chromosome, complete genomehypothetical protein8e-25112
NC_016584:487613:493513493513493947435Desulfosporosinus orientis DSM 765 chromosome, complete genomehypothetical protein8e-22102
NC_020134:1328302:132920413292041329614411Clostridium stercorarium subsp. stercorarium DSM 8532, completehypothetical protein6e-2096.3
NC_009437:166179:185858185858186313456Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehypothetical protein3e-1270.5