Pre_GI: BLASTP Hits

Some Help

Query: NC_009089:873295:894735 Clostridium difficile 630, complete genome

Start: 894735, End: 895607, Length: 873

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017179:805867:830337830337831209873Clostridium difficile BI1, complete genomeputative radical SAM superfamily protein1e-168592
NC_013315:796313:820783820783821655873Clostridium difficile CD196 chromosome, complete genomeradical SAM protein1e-168592
NC_013316:796895:818323818323819195873Clostridium difficile R20291, complete genomeputative radical SAM superfamily protein1e-168592
NC_018870:1953748:1975292197529219762931002Thermacetogenium phaeum DSM 12270 chromosome, complete genomealdolase-like protein4e-45181
NC_000868:1168819:116881911688191169646828Pyrococcus abyssi GE5, complete genomehypothetical protein6e-42171
NC_016051:1471782:147787714778771478704828Thermococcus sp. AM4 chromosome, complete genomehypothetical protein5e-41168
NC_016584:4478200:447891344789134479887975Desulfosporosinus orientis DSM 765 chromosome, complete genomebiotin synthetase-like protein7e-37154
NC_020411:981888:987949987949988947999Hydrogenobaculum sp. HO, complete genomeRadical SAM domain protein7e-35147
NC_015557:981698:987759987759988757999Hydrogenobaculum sp. 3684 chromosome, complete genomeRadical SAM domain protein7e-35147
NC_015587:981808:987869987869988867999Hydrogenobaculum sp. SHO chromosome, complete genomeRadical SAM domain protein7e-35147
NC_011126:992994:9990559990551000053999Hydrogenobaculum sp. Y04AAS1, complete genomeRadical SAM domain protein7e-35147
NC_013926:614206:616719616719617558840Aciduliprofundum boonei T469 chromosome, complete genomeRadical SAM domain protein6e-34144
NC_000961:828416:847693847693848409717Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-33143
NC_012622:1010210:103347510334751034344870Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeradical SAM protein2e-25116
NC_003106:1879441:189598518959851896875891Sulfolobus tokodaii str. 7, complete genomehypothetical protein2e-21103
NC_015518:1518047:151804715180471518790744Acidianus hospitalis W1 chromosome, complete genomeRadical SAM domain-containing protein8e-1890.9
NC_003106:1175000:119739911973991198130732Sulfolobus tokodaii str. 7, complete genomehypothetical protein2e-1480.1
NC_014160:719408:743143743143743994852Thermosphaera aggregans DSM 11486 chromosome, complete genomeradical SAM domain-containing protein4e-1168.9