Pre_GI: BLASTP Hits

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Query: NC_009089:581655:602106 Clostridium difficile 630, complete genome

Start: 602106, End: 602234, Length: 129

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome1e-1891.7
NC_021175:1597613:160658616065861606753168Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein2e-1580.9
NC_015500:1204501:121993012199301220118189Treponema brennaborense DSM 12168 chromosome, complete genomehypothetical protein1e-1065.1
NC_014828:2038692:208571620857162085907192Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein1e-0962
NC_008023:1070986:110104411010441101217174Streptococcus pyogenes MGAS2096, complete genomehypothetical protein3e-0960.5
NC_014393:4775452:478109247810924781278187Clostridium cellulovorans 743B chromosome, complete genome6e-0959.7
NC_016048:3063888:309298230929823093152171Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein3e-0650.8
NC_015172:1195782:122634812263481226509162Syntrophobotulus glycolicus DSM 8271 chromosome, complete genome3e-0650.4