Pre_GI: BLASTP Hits

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Query: NC_009089:478328:495221 Clostridium difficile 630, complete genome

Start: 495221, End: 496039, Length: 819

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013515:715009:726557726557727360804Streptobacillus moniliformis DSM 12112, complete genomeKilA domain protein1e-151535
NC_013316:2033906:209749720974972098300804Clostridium difficile R20291, complete genomehypothetical protein1e-151535
NC_021184:1024305:103167710316771032495819Desulfotomaculum gibsoniae DSM 7213, complete genomeKilA-N domain-containing protein3e-120431
NC_009615:3904962:394365439436543944457804Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein9e-114409
NC_009615:2590207:262698526269852627788804Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein9e-114409
NC_009654:3980289:399929539992954000119825Marinomonas sp. MWYL1, complete genomehypothetical protein4e-91334
NC_019960:1126000:112622111262211127051831Prevotella dentalis DSM 3688 chromosome 1, complete sequenceKilA-N domain-containing protein2e-87322
NC_015436:270820:276010276010276903894Spirochaeta coccoides DSM 17374 chromosome, complete genomeKilA, /APSES-type HTH DNA-binding domain-containing protein2e-84312
NC_014371:1328500:134340213434021344220819Prevotella melaninogenica ATCC 25845 chromosome chromosome II,hypothetical protein2e-78292
NC_015433:1998427:201061520106152011445831Streptococcus suis ST3 chromosome, complete genomeKilA domain-containing protein9e-75280
NC_013171:342714:387818387818388657840Anaerococcus prevotii DSM 20548, complete genomeKilA domain protein2e-73276
NC_014914:1327245:134861013486101349314705Taylorella equigenitalis MCE9 chromosome, complete genomehypothetical protein4e-66251
NC_015321:4495394:450907545090754509395321Fluviicola taffensis DSM 16823 chromosome, complete genome4e-32138
NC_015578:1038588:104643710464371046784348Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein2e-22106
NC_007512:944941:970051970051970539489Pelodictyon luteolum DSM 273, complete genomehypothetical protein2e-1582.8
NC_013061:1052957:107235210723521072585234Pedobacter heparinus DSM 2366, complete genomehypothetical protein3e-1375.9
NC_012470:1390285:140039214003921400661270Streptococcus equi subsp. zooepidemicus, complete genome1e-1170.9
NC_011083:374000:394535394535395221687Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,gp791e-0757
NC_012125:1330066:135427213542721354784513Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-0756.6
NC_007712:3067000:309105230910523091792741Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0755.8
NC_007712:2806500:284443028444302845170741Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0755.8
NC_015578:1038588:104623410462341046398165Treponema primitia ZAS-2 chromosome, complete genome7e-0754.7
NC_012751:409333:412026412026412712687Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completehypothetical protein7e-0754.7
NC_017033:2081206:210655121065512107522972Frateuria aurantia DSM 6220 chromosome, complete genomeKilA-N domain-containing protein1e-0653.9