Pre_GI: BLASTP Hits

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Query: NC_009089:478328:485335 Clostridium difficile 630, complete genome

Start: 485335, End: 485550, Length: 216

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012471:719000:726946726946727161216Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon membrane protein2e-2098.2
NC_012471:1197534:126397412639741264189216Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon membrane protein3e-1994
NC_013164:67500:687396873968954216Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequencehypothetical protein2e-1891.3
NC_018867:10238:276182761827833216Dehalobacter sp. CF chromosome, complete genomeMAFF2 protein2e-1788.2
NC_012781:2552723:256917025691702569328159Eubacterium rectale ATCC 33656, complete genomehypothetical protein1e-1685.1
NC_012781:700226:729431729431729589159Eubacterium rectale ATCC 33656, complete genomehypothetical protein1e-1685.1
NC_016630:434500:446826446826447101276Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein2e-1684.3
NC_016048:3063888:306802330680233068235213Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-1684.3
NC_009089:1283000:131035013103501310565216Clostridium difficile 630, complete genomeputative conjugative transfer protein2e-1684
NC_009706:238160:256874256874257086213Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-1684
NC_014376:317312:318190318190318402213Clostridium saccharolyticum WM1 chromosome, complete genomehypothetical protein3e-1684
NC_004668:2198027:225246522524652252596132Enterococcus faecalis V583, complete genomehypothetical protein2e-1064.7