Pre_GI: BLASTP Hits

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Query: NC_009089:428075:430119 Clostridium difficile 630, complete genome

Start: 430119, End: 430322, Length: 204

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017218:178564:190074190074190277204Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeexcisionase8e-27119
NC_015385:2050648:207467720746772074880204Treponema succinifaciens DSM 2489 chromosome, complete genomeExcisionase from transposon Tn9162e-26117
NC_009442:867625:889724889724889927204Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein1e-25115
NC_021175:1597613:160878016087801608983204Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein1e-25115
NC_013895:1332832:135314513531451353348204Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeDNA binding domain, excisionase family1e-25115
NC_009089:1283000:128578012857801285983204Clostridium difficile 630, complete genomeexcisionase2e-25114
NC_016630:1247251:124855012485501248753204Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein2e-24111
NC_013740:1218429:125278612527861252995210Acidaminococcus fermentans DSM 20731, complete genomeExcisionase from transposon Tn9163e-1167
NC_013740:1178370:119503511950351195238204Acidaminococcus fermentans DSM 20731, complete genomeExcisionase from transposon Tn9161e-0961.6
NC_015697:1480552:148453614845361484736201Lactobacillus reuteri SD2112 chromosome, complete genomehypothetical protein1e-0755.1