Pre_GI: BLASTP Hits

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Query: NC_009089:3142976:3165097 Clostridium difficile 630, complete genome

Start: 3165097, End: 3165570, Length: 474

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:3056925:307887130788713079344474Clostridium difficile R20291, complete genomehypothetical protein4e-75279
NC_018664:1795223:180016318001631800633471Clostridium acidurici 9a chromosome, complete genomehypothetical protein DUF12123e-1684
NC_012658:545840:553273553273553716444Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein7e-1373.2
NC_013171:636293:642273642273642749477Anaerococcus prevotii DSM 20548, complete genomehypothetical protein7e-1373.2
NC_014657:944000:964120964120964575456Caldicellulosiruptor owensensis OL chromosome, complete genomehypothetical protein5e-1270.1
NC_016641:3217201:323439132343913234825435Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein6e-1269.7
NC_007350:2019623:203680020368002037300501Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,hypothetical protein1e-1168.9
NC_010376:1175916:118806511880651188538474Finegoldia magna ATCC 29328, complete genomehypothetical protein1e-1168.9
NC_019978:1477724:149397414939741494405432Halobacteroides halobius DSM 5150, complete genomehypothetical protein1e-1065.9