Pre_GI: BLASTP Hits

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Query: NC_009089:2150062:2165646 Clostridium difficile 630, complete genome

Start: 2165646, End: 2165876, Length: 231

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009714:292470:296734296734296946213Campylobacter hominis ATCC BAA-381, complete genomehypothetical protein2e-30130
NC_013895:1332832:137242013724201372626207Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeDNA-binding protein7e-28122
NC_014376:3009403:302964430296443029853210Clostridium saccharolyticum WM1 chromosome, complete genomeputative transcriptional regulator, XRE family4e-1373.6
NC_018704:1424728:144287714428771443080204Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein4e-1373.2
NC_010337:616304:622157622157622372216Heliobacterium modesticaldum Ice1, complete genomehypothetical protein4e-1270.1
NC_002936:1004570:101054210105421010766225Dehalococcoides ethenogenes 195, complete genomehypothetical protein7e-1269.3
NC_016023:579000:588908588908589114207Bacillus coagulans 36D1 chromosome, complete genomeXRE family transcriptional regulator6e-1269.3
NC_011830:693555:708963708963709190228Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, XRE family6e-1269.3
NC_003909:386880:389907389907390137231Bacillus cereus ATCC 10987, complete genomehypothetical protein5e-1166.6
NC_015913:1248000:126499212649921265204213Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeXRE family transcriptional regulator1e-1065.5
NC_014314:1148000:115622711562271156457231Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeXRE family transcriptional regulator2e-1064.3
NC_014828:2038692:205247720524772052686210Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein2e-1064.3
NC_016627:4270949:427382042738204274029210Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator1e-0962
NC_013216:3473119:348796434879643488182219Desulfotomaculum acetoxidans DSM 771, complete genometranscriptional regulator, XRE family1e-0961.6
NC_012781:3315614:332180833218083322038231Eubacterium rectale ATCC 33656, complete genomehypothetical protein1e-0961.6
NC_016627:793583:809668809668809895228Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator2e-0960.8
NC_015565:2408669:241511624151162415337222Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completehelix-turn-helix domain-containing protein1e-0858.2
NC_015737:1976000:200845420084542008744291Clostridium sp. SY8519, complete genomeputative transcriptional regulator4e-0856.6
NC_016077:1944000:195332819533281953483156Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein4e-0856.6
NC_015436:202384:206041206041206265225Spirochaeta coccoides DSM 17374 chromosome, complete genomehypothetical protein5e-0856.2
NC_015436:270820:277367277367277567201Spirochaeta coccoides DSM 17374 chromosome, complete genomehypothetical protein1e-0755.1
NC_008530:1454118:145603314560331456281249Lactobacillus gasseri ATCC 33323, complete genomePredicted transcriptional regulator1e-0755.1
NC_010337:2848360:288106328810632881281219Heliobacterium modesticaldum Ice1, complete genomehypothetical protein2e-0754.7
NC_011837:3226500:323652932365293236777249Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0753.5
NC_009706:3291330:330503633050363305275240Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-0753.5
NC_014246:1457992:147095914709591471216258Mobiluncus curtisii ATCC 43063 chromosome, complete genomehypothetical protein4e-0753.5
NC_020995:3300751:331097133109713311201231Enterococcus casseliflavus EC20, complete genomehypothetical protein9e-0752.4
NC_015977:255029:261729261729261956228Roseburia hominis A2-183 chromosome, complete genomehypothetical protein9e-0648.9