Pre_GI: BLASTP Hits

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Query: NC_009089:1283000:1313507 Clostridium difficile 630, complete genome

Start: 1313507, End: 1314481, Length: 975

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014169:1442435:1450682145068214518271146Bifidobacterium longum subsp. longum JDM301 chromosome, completehypothetical protein7e-108390
NC_018867:10238:243452434525271927Dehalobacter sp. CF chromosome, complete genomehypothetical protein4e-81301
NC_015977:3324000:3335546333554633366101065Roseburia hominis A2-183 chromosome, complete genomereplication initiator A domain-containing protein1e-33143
NC_004668:2198027:225733422573342258320987Enterococcus faecalis V583, complete genomehypothetical protein6e-29128
NC_015977:3215770:323544932354493235727279Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-23110
NC_009674:2985878:301411830141183014783666Bacillus cytotoxicus NVH 391-98 chromosome, complete genome2e-22106
NC_016052:842762:850081850081850812732Tetragenococcus halophilus NBRC 12172, complete genomehypothetical protein1e-1377.8
NC_013316:2033906:2041094204109420421161023Clostridium difficile R20291, complete genomeputative conjugative transposon protein5e-1375.5
NC_009513:1184000:119289111928911193748858Lactobacillus reuteri F275, complete genomeprimosome, DnaD subunit1e-1170.9
NC_009513:870837:877735877735878592858Lactobacillus reuteri F275, complete genomeprimosome, DnaD subunit1e-1170.9
NC_010609:880196:887067887067887951885Lactobacillus reuteri JCM 1112, complete genomephage replication protein1e-1170.9
NC_009487:921884:930061930061930831771Staphylococcus aureus subsp. aureus JH9 chromosome, completehypothetical protein2e-1170.5
NC_009632:921759:929936929936930706771Staphylococcus aureus subsp. aureus JH1 chromosome, completephi ETA orf 22-like protein2e-1170.5
NC_016928:1538901:156379115637911564561771Staphylococcus aureus subsp. aureus M013 chromosome, completehypothetical protein2e-1170.5
NC_015458:2338437:234893623489362349760825Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein2e-1170.5
NC_017093:2173684:218162421816242182442819Actinoplanes missouriensis 431, complete genomehypothetical protein3e-1066.2
NC_008260:2340824:235583123558312356217387Alcanivorax borkumensis SK2, complete genomehypothetical protein2e-0860.1
NC_013450:854790:865207865207865977771Staphylococcus aureus subsp. aureus ED98, complete genomeputative phage replication protein1e-0757.8
NC_009641:1105075:110862011086201109390771Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein1e-0757.4
NC_009641:327325:330405330405331175771Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein1e-0757.4
NC_016109:4485925:449858744985874499531945Kitasatospora setae KM-6054, complete genomehypothetical protein3e-0653.1
NC_015696:285456:287381287381287905525Francisella sp. TX077308 chromosome, complete genomehypothetical protein3e-0653.1
NC_007508:1446526:145343914534391454248810Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative phage replication protein9e-0651.6