Pre_GI: BLASTP Hits

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Query: NC_008262:2025699:2028598 Clostridium perfringens SM101, complete genome

Start: 2028598, End: 2029884, Length: 1287

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009617:1165539:1182905118290511841941290Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein5e-123441
NC_016012:879972:8921068921068933711266Candidatus Arthromitus sp. SFB-rat-Yit, complete genomehypothetical protein1e-67257
NC_016112:3103716:3112954311295431143541401Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein9e-1995.1
NC_008702:3580380:3584536358453635857711236Azoarcus sp. BH72, complete genomeconserved hypothetical protein1e-1895.1
NC_015563:1129469:1144508114450811457671260Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein1e-1791.7
NC_009659:2523874:2533837253383725351441308Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein4e-1789.7
NC_017506:1996652:2021739202173920231391401Marinobacter adhaerens HP15 chromosome, complete genomeTPR/glycosyl transferase domain protein5e-1789.4
NC_020541:3156500:3203223320322332044761254Rhodanobacter sp. 2APBS1, complete genomehypothetical protein2e-1687
NC_013205:19295:3400134001353651365Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Glycosyltransferase-like protein7e-1478.6
NC_017507:43135:4666146661478961236Marinobacter adhaerens HP15 plasmid pHP-187, complete sequencehypothetical protein2e-1377.8
NC_014355:2775979:2800782280078228021791398Candidatus Nitrospira defluvii, complete genomeputative glycosyl transferase2e-1377.4
NC_011831:2410607:2420055242005524213471293Chloroflexus aggregans DSM 9485, complete genomehypothetical protein1e-1274.3
NC_013173:3679326:3694009369400936953101302Desulfomicrobium baculatum DSM 4028, complete genomehypothetical protein4e-1273.2
NC_013501:1547508:1550111155011115514001290Rhodothermus marinus DSM 4252, complete genomeglycosyl transferase group 11e-1171.6
NC_018679:1858448:1872230187223018734621233Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completehypothetical protein2e-1170.5
NC_007969:726086:7420577420577432531197Psychrobacter cryohalolentis K5, complete genomehypothetical protein7e-1168.9
NC_009615:4642500:4662428466242846636631236Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein7e-1065.5
NC_008576:4130000:4142807414280741440571251Magnetococcus sp. MC-1, complete genomehypothetical protein9e-0962
NC_008261:551513:5660795660795672061128Clostridium perfringens ATCC 13124, complete genomeglycosyl transferase, group 12e-0860.8
NS_000195:1785910:1813540181354018148141275Candidatus Cloacamonas acidaminovoranshypothetical protein3e-0756.6
NC_015388:2434922:2445148244514824464341287Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeglycosyl transferase group 18e-0652