Pre_GI: BLASTP Hits

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Query: NC_008261:551513:562178 Clostridium perfringens ATCC 13124, complete genome

Start: 562178, End: 563644, Length: 1467

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008609:2643000:2658986265898626604581473Pelobacter propionicus DSM 2379, complete genomepolysaccharide biosynthesis protein2e-1997.8
NC_007645:2779381:2802048280204828035051458Hahella chejuensis KCTC 2396, complete genomeMembrane protein involved in the export of O-antigen and teichoic acid3e-1687
NC_002939:2124642:2151750215175021533061557Geobacter sulfurreducens PCA, complete genomepolysaccharide biosynthesis domain protein1e-1585.1
NC_010175:2062932:2076939207693920783781440Chloroflexus aurantiacus J-10-fl, complete genomepolysaccharide biosynthesis protein3e-1583.6
NC_012032:2059000:2072403207240320738421440Chloroflexus sp. Y-400-fl, complete genomepolysaccharide biosynthesis protein3e-1583.6
NC_009767:997500:1010446101044610119121467Roseiflexus castenholzii DSM 13941, complete genomepolysaccharide biosynthesis protein2e-1274.3
NC_007954:3171081:3194869319486931963261458Shewanella denitrificans OS217, complete genomehypothetical protein6e-1272.8
NC_016631:1757788:1759741175974117612701530Granulicella mallensis MP5ACTX8 chromosome, complete genomepolysaccharide biosynthesis protein1e-1171.6
NC_013199:2058857:2075963207596320773541392Lactobacillus rhamnosus Lc 705, complete genomecapsular exopolysaccharide biosynthesis protein (Wzx)8e-1168.9
NC_009802:1525144:1537912153791215393061395Campylobacter concisus 13826, complete genomecytosol aminopeptidase8e-1168.9
NC_007908:1328832:1335167133516713366481482Rhodoferax ferrireducens T118, complete genomepolysaccharide biosynthesis protein3e-1067
NC_013173:3679326:3689094368909436903501257Desulfomicrobium baculatum DSM 4028, complete genomepolysaccharide biosynthesis protein4e-1066.6
NC_018645:2690325:2694413269441326958911479Desulfobacula toluolica Tol2, complete genomepolysaccharide biosynthesis protein7e-1065.9
NC_016023:915178:9423349423349437371404Bacillus coagulans 36D1 chromosome, complete genomepolysaccharide biosynthesis protein1e-0965.1
NC_010524:3391075:3401631340163134031061476Leptothrix cholodnii SP-6, complete genomepolysaccharide biosynthesis protein2e-0963.9
NC_015500:2417041:2424478242447824259021425Treponema brennaborense DSM 12168 chromosome, complete genomepolysaccharide biosynthesis protein1e-0861.6
NC_011653:748844:7557057557057571231419Thermosipho africanus TCF52B, complete genomewzx, putative1e-0861.2
NC_003552:4637764:4646743464674346482211479Methanosarcina acetivorans C2A, complete genomepolysaccharide biosynthesis protein9e-0858.9
NC_008346:800500:8251138251138264051293Syntrophomonas wolfei subsp. wolfei str. Goettingen, completehypothetical protein1e-0758.5
NC_016631:4472987:4480078448007844815831506Granulicella mallensis MP5ACTX8 chromosome, complete genomepolysaccharide biosynthesis protein1e-0758.2
NC_014253:1197005:1216734121673412181761443Methanohalobium evestigatum Z-7303 chromosome, complete genomepolysaccharide biosynthesis protein6e-0755.8
NC_011978:15059:3298232982343791398Thermotoga neapolitana DSM 4359, complete genomePolysaccharide biosynthesis protein3e-0653.5
NC_007969:726086:7384067384067398331428Psychrobacter cryohalolentis K5, complete genomepolysaccharide biosynthesis protein4e-0653.1
NC_013642:400651:4186864186864201251440Thermotoga naphthophila RKU-10, complete genomepolysaccharide biosynthesis protein8e-0652.4
NC_000853:648075:6533956533956548341440Thermotoga maritima MSB8, complete genomelipopolysaccharide biosynthesis protein8e-0652.4