Pre_GI: BLASTP Hits

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Query: NC_008261:2481500:2487087 Clostridium perfringens ATCC 13124, complete genome

Start: 2487087, End: 2487584, Length: 498

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2266757:227325422732542273760507Clostridium perfringens str. 13, complete genomehypothetical protein4e-62236
NC_008262:2150944:215635621563562156853498Clostridium perfringens SM101, complete genomeTspO/MBR family protein4e-60229
NC_017295:279633:294642294642295154513Clostridium acetobutylicum EA 2018 chromosome, complete genomesensory protein9e-31132
NC_003030:279643:294652294652295164513Clostridium acetobutylicum ATCC 824, complete genomeTryptophan-rich possible sensory protein, TSPO homolog9e-31132
NC_015687:279641:294650294650295162513Clostridium acetobutylicum DSM 1731 chromosome, complete genometryptophan-rich sensory protein, TSPO-like protein9e-31132
NC_016012:236012:246796246796247263468Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeTspO and MBR like protein4e-2097.4
NC_016048:2055199:207487620748762075343468Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1892.4
NC_017249:908500:909712909712910155444Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-1788.2
NC_008553:329458:349496349496349969474Methanosaeta thermophila PT, complete genomeTspO and MBR like proteins1e-1479
NC_013922:1201456:122344712234471223944498Natrialba magadii ATCC 43099 chromosome, complete genomeTspO and MBR like protein4e-1477
NC_010803:634497:637336637336637815480Chlorobium limicola DSM 245, complete genomeTspO and MBR like protein7e-1476.6
NC_010793:541040:561706561706562200495Orientia tsutsugamushi str. Ikeda, complete genomeDNA gyrase inhibitor1e-1375.5
NC_003919:2091547:211308021130802113580501Xanthomonas axonopodis pv. citri str. 306, complete genometryptophan-rich sensory protein2e-1375.1
NC_016010:2059791:208335820833582083846489Xanthomonas axonopodis pv. citrumelo F1 chromosome, completetryptophan-rich sensory protein3e-1374.7
NC_010688:2400471:241912524191252419613489Xanthomonas campestris pv. campestris, complete genomePeripheral-type benzodiazepine receptor1e-1272.4
NC_010943:2422838:242563124256312426140510Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane TspO/MBR tryptophan-rich family protein2e-1271.6
NC_004578:3193490:322593532259353226375441Pseudomonas syringae pv. tomato str. DC3000, complete genomeTspO/MBR family protein1e-1168.9
NC_013223:1763631:176955617695561770053498Desulfohalobium retbaense DSM 5692, complete genomeTspO and MBR like protein4e-1167.4
NC_014150:1099507:112039811203981120865468Brachyspira murdochii DSM 12563 chromosome, complete genomeTspO and MBR like protein1e-1065.9
NC_007005:3199820:320296732029673203407441Pseudomonas syringae pv. syringae B728a, complete genomeTspO/MBR-related protein1e-1065.5
NC_015942:1711026:171793817179381718405468Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTspO and MBR like protein3e-1064.3
NC_017271:2084219:210992521099252110413489Xanthomonas campestris pv. raphani 756C chromosome, completetryptophan-rich sensory protein6e-1063.5
NC_015380:859424:872650872650873135486Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genometspO/MBR family1e-0962.4
NC_020209:2838582:284399028439902844430441Pseudomonas poae RE*1-1-14, complete genomeTspO/MBR family protein4e-0960.8
NC_020302:744956:773855773855774376522Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein3e-0651.2