Pre_GI: BLASTP Hits

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Query: NC_008228:2068641:2076094 Pseudoalteromonas atlantica T6c, complete genome

Start: 2076094, End: 2077383, Length: 1290

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014216:1197704:1212795121279512140721278Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)6e-108391
NC_020260:1293860:1304355130435513056411287Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-106384
NC_009434:796878:8065888065888077721185Pseudomonas stutzeri A1501, complete genomehypothetical protein3e-93342
NC_015703:3842144:3854989385498938564671479Runella slithyformis DSM 19594 chromosome, complete genomeRNA-directed DNA polymerase9e-60231
NC_014335:5165211:5165211516521151665031293Bacillus cereus biovar anthracis str. CI chromosome, completeputative reverse transcriptase9e-52204
NC_018721:943801:9612119612119627941584Psychroflexus torquis ATCC 700755 chromosome, complete genomeretron-type reverse transcriptase3e-48192
NC_015873:924392:9395999395999410051407Megasphaera elsdenii DSM 20460, complete genomehypothetical protein1e-47191
NC_014334:1848340:1862085186208518635001416Lactobacillus casei str. Zhang chromosome, complete genomehypothetical protein1e-40167
NC_008609:1027838:1047545104754510531575613Pelobacter propionicus DSM 2379, complete genomehypothetical protein4e-1169.7
NC_011060:2525367:2541825254182525440082184Pelodictyon phaeoclathratiforme BU-1, complete genomeCRISPR-associated protein Cas15e-1065.9
NC_014973:3414459:3442836344283634441761341Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.9
NC_014973:4503054:4518889451888945202291341Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.9
NC_014973:1257625:1266921126692112682611341Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.9
NC_014973:2425994:2433276243327624346161341Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.9
NC_014973:1257625:1272068127206812734081341Geobacter sp. M18 chromosome, complete genomeRNA-directed DNA polymerase2e-0963.9
NC_002939:2697767:2709108270910827104121305Geobacter sulfurreducens PCA, complete genomegroup II intron, maturase5e-0962.8
NC_002939:1021297:1029182102918210304861305Geobacter sulfurreducens PCA, complete genomegroup II intron, maturase5e-0962.8
NC_013851:949973:9619009619009632551356Allochromatium vinosum DSM 180 chromosome, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)5e-0962.8
NC_013194:4964000:4991894499189449931561263Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeRNA-directed DNA polymerase (Reverse transcriptase)1e-0861.6
NC_008095:4189082:4209761420976142110711311Myxococcus xanthus DK 1622, complete genomegroup II intron, maturase1e-0861.2
NC_008095:2420066:2434296243429624356061311Myxococcus xanthus DK 1622, complete genomegroup II intron, maturase1e-0861.2
NC_019902:2372097:2380328238032823815751248Thioalkalivibrio nitratireducens DSM 14787, complete genomeRetron-type reverse transcriptase6e-0858.9
NC_013720:1382561:1405107140510714079352829Pirellula staleyi DSM 6068, complete genomeCRISPR-associated protein Cas16e-0755.8
NC_013720:1405107:1405107140510714079352829Pirellula staleyi DSM 6068, complete genomeCRISPR-associated protein Cas16e-0755.8
NC_019892:5613436:5623249562324956250571809Singulisphaera acidiphila DSM 18658 chromosome, complete genomereverse transcriptase1e-0654.7
NC_020291:5641444:5645748564574856471061359Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeretron-type reverse transcriptase1e-0654.7
NC_014034:1330843:1341665134166513430081344Rhodobacter capsulatus SB1003 chromosome, complete genomereverse transcriptase family protein7e-0652.4