Pre_GI: BLASTP Hits

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Query: NC_008146:4019711:4039544 Mycobacterium sp. MCS, complete genome

Start: 4039544, End: 4040392, Length: 849

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008705:4053070:407402640740264074976951Mycobacterium sp. KMS, complete genomeExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B6e-147520
NC_010473:1384000:138894413889441389888945Escherichia coli str. K-12 substr. DH10B, complete genome2,3-dihydroxyphenylpropionate 1,2-dioxygenase2e-69262
NC_007384:307013:323274323274324218945Shigella sonnei Ss046, complete genome2,3-dihydroxyphenylpropionate 1,2-dioxygenase2e-69262
NC_014118:987889:100433310043331005277945Burkholderia sp. CCGE1002 chromosome chromosome 2, completeExtradiol ring-cleavage dioxygenase class III protein subunit B3e-68258
NC_009921:3384116:340632134063213407262942Frankia sp. EAN1pec, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B3e-65248
NC_016948:2931285:297894629789462979857912Mycobacterium intracellulare MOTT-64 chromosome, complete genome3-(2,3-dihydroxyphenyl)propionate dioxygenase2e-28126
NC_008595:2687245:269157126915712692293723Mycobacterium avium 104, complete genomearomatic ring-opening dioxygenase, catalytic LigB subunit1e-22107
NC_015563:3401867:340186734018673402739873Delftia sp. Cs1-4 chromosome, complete genomeprotocatechuate 4,5-dioxygenase3e-1479
NC_010002:4175809:419400741940074194879873Delftia acidovorans SPH-1, complete genomeProtocatechuate 4,5-dioxygenase5e-1478.2
NC_014098:2332938:234623223462322347038807Bacillus tusciae DSM 2912 chromosome, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B7e-1374.7
NC_015554:4002952:400954440095444010371828Alteromonas sp. SN2 chromosome, complete genomeprotocatechuate 4,5-dioxygenase subunit beta7e-1271.2
NC_009376:446224:470685470685471515831Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeextradiol ring-cleavage dioxygenase III subunit B2e-1170.1
NC_016147:2964178:297445429744542975260807Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeprotocatechuate 4,5-dioxygenase subunit beta2e-1169.7
NC_002927:4392768:4395098439509843961321035Bordetella bronchiseptica RB50, complete genomeputative dioxygenase2e-1066.6
NC_009376:483307:483307483307483894588Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeprotocatechuate 4,5-dioxygenase6e-0961.6
NC_013716:3327881:3326622332662233278841263Citrobacter rodentium ICC168, complete genomeputative extradiol dioxygenase8e-0754.7