Pre_GI: BLASTP Hits

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Query: NC_008044:136844:152904 Silicibacter sp. TM1040, complete genome

Start: 152904, End: 153326, Length: 423

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006582:883922:883922883922884353432Bacillus clausii KSM-K16, complete genomepositive regulator of sigma-B activity2e-29127
NC_004193:375416:653476653476653877402Oceanobacillus iheyensis HTE831, complete genomepositive regulator of sigma-B activity4e-27120
NC_019896:3491000:351985735198573520264408Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeAnti-sigma-B factor RsbT3e-26117
NC_018704:347948:349984349984350382399Amphibacillus xylanus NBRC 15112, complete genomeserine/threonine protein kinase RsbT6e-25112
NC_014657:473479:486876486876487301426Caldicellulosiruptor owensensis OL chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase7e-23105
NC_014924:2517068:252227525222752522673399Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase7e-2199.4
NC_010505:5525461:5552538555253855544541917Methylobacterium radiotolerans JCM 2831, complete genomehistidine kinase3e-2097.1
NC_015957:690817:708138708138708617480Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-1993.2
NC_010505:5525461:555113955511395551543405Methylobacterium radiotolerans JCM 2831, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase4e-1683.6
NC_010505:5525461:555154655515465552541996Methylobacterium radiotolerans JCM 2831, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-1272
NC_020126:3979792:398644439864443987145702Myxococcus stipitatus DSM 14675, complete genomeSer/Thr protein kinase2e-1270.9
NC_019673:6394319:645153364515336451946414Saccharothrix espanaensis DSM 44229 complete genomeAnti-sigma regulatory factor, serine/threonine protein kinase3e-1167
NC_019673:6394319:6452007645200764530321026Saccharothrix espanaensis DSM 44229 complete genomeAnti-sigma regulatory factor, serine/threonine protein kinase1e-1065.1
NC_015957:690817:7086147086147096331020Streptomyces violaceusniger Tu 4113 chromosome, complete genomeStage II sporulation protein E4e-1063.2
NC_011297:767333:770841770841771713873Dictyoglomus thermophilum H-6-12, complete genomeanti-sigma regulatory factor5e-1063.2
NC_011661:938754:942246942246943118873Dictyoglomus turgidum DSM 6724, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-0962
NC_010424:697187:7285027285027306642163Candidatus Desulforudis audaxviator MP104C, complete genome4e-0960.1
NC_016627:1485799:151163215116321512057426Clostridium clariflavum DSM 19732 chromosome, complete genomeanti-sigma regulatory factor3e-0753.9
NC_013522:698114:726915726915727343429Thermanaerovibrio acidaminovorans DSM 6589, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-0753.1
NC_020126:3979792:398588139858813986447567Myxococcus stipitatus DSM 14675, complete genomeATPase3e-0650.8