Pre_GI: BLASTP Hits

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Query: NC_007952:495000:505213 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 505213, End: 506610, Length: 1398

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007952:495000:5021535021535035171365Burkholderia xenovorans LB400 chromosome 2, complete sequencePutative lipoprotein0812
NC_007952:495000:5037935037935050641272Burkholderia xenovorans LB400 chromosome 2, complete sequencePutative lipoprotein0734
NC_007952:495000:5067605067605080311272Burkholderia xenovorans LB400 chromosome 2, complete sequencePutative lipoprotein0669
NC_010551:1462827:1472844147284414744901647Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceSel1 domain protein repeat-containing protein1e-115417
NC_007511:3371319:3379749337974933813891641Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein4e-111402
NC_012791:4079062:4090342409034240916491308Variovorax paradoxus S110 chromosome 1, complete genomeSel1 domain protein repeat-containing protein2e-78293
NC_012791:4079062:4091771409177140930901320Variovorax paradoxus S110 chromosome 1, complete genomeSel1 domain protein repeat-containing protein6e-76285
NC_012791:4079062:4088851408885140902061356Variovorax paradoxus S110 chromosome 1, complete genomeSel1 domain protein repeat-containing protein3e-72273
NC_008544:615448:6312316312316327931563Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceSel1 domain protein repeat-containing protein9e-67254
NC_008060:1544920:1551205155120515527671563Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceSel1-like repeat9e-67254
NC_010557:1030319:1036216103621610377541539Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceSel1 domain protein repeat-containing protein2e-61236
NC_015856:29338:3373133731347951065Collimonas fungivorans Ter331 chromosome, complete genomeSel1-like repeat protein7e-57221
NC_014323:245979:2534372534372549931557Herbaspirillum seropedicae SmR1 chromosome, complete genomeTPR repeat containing, SEL1 subfamily5e-53208
NC_014323:245979:2510822510822526351554Herbaspirillum seropedicae SmR1 chromosome, complete genomeTPR repeat containing, SEL1 subfamily1e-50201
NC_015376:1752883:1763779176377917650231245Burkholderia gladioli BSR3 chromosome chromosome 2, completeSel1 domain protein repeat-containing protein3e-29130
NC_010552:1212000:1223941122394112251791239Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceSel1 domain protein repeat-containing protein7e-27122
NC_011001:163813:1764521764521777621311Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative lipoprotein1e-26121
NC_009255:1250939:1289405128940512906191215Burkholderia vietnamiensis G4 chromosome 2, complete sequenceSel1 domain-containing protein1e-22107
NC_016590:1183470:1191203119120311924951293Burkholderia sp. YI23 chromosome 3, complete sequenceputative lipoprotein1e-21105
NC_011001:163813:1745311745311758381308Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative lipoprotein2e-21103
NC_005773:106000:1331081331081341301023Pseudomonas syringae pv. phaseolicola 1448A, complete genomelipoprotein, putative2e-1997.4
NC_016626:400080:4200434200434213201278Burkholderia sp. YI23 plasmid byi_1p, complete sequenceSel1 domain-containing protein repeat-containing protein5e-1995.9
NC_007005:5882205:589505058950505896006957Pseudomonas syringae pv. syringae B728a, complete genomeSel1-like repeat1e-1895.1
NC_016590:1183470:1193848119384811950681221Burkholderia sp. YI23 chromosome 3, complete sequenceSel1 domain-containing protein repeat-containing protein6e-1892.4
NC_005085:1269787:1300303130030313015861284Chromobacterium violaceum ATCC 12472, complete genomeprobable lipoprotein2e-1790.9
NC_016626:400080:4175514175514188281278Burkholderia sp. YI23 plasmid byi_1p, complete sequenceSel1-like repeat protein1e-1584.7
NC_007005:5882205:5896106589610658971371032Pseudomonas syringae pv. syringae B728a, complete genomeSel1-like repeat3e-1583.2
NC_012913:280506:2875702875702887271158Aggregatibacter aphrophilus NJ8700, complete genomeSel1 domain protein repeat-containing protein1e-1171.2
NC_012913:280506:2888402888402899941155Aggregatibacter aphrophilus NJ8700, complete genomehypothetical protein5e-0962.8
NC_010830:1069666:1078070107807010809552886Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-0861.6
NC_010830:1069666:1084709108470910867632055Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-0860.5
NC_010830:475248:5044185044185074263009Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-0757
NC_005773:106000:132507132507133010504Pseudomonas syringae pv. phaseolicola 1448A, complete genomelipoprotein, putative5e-0756.2
NC_014394:1594071:1605189160518916064091221Gallionella capsiferriformans ES-2 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein6e-0755.8
NC_010830:384812:3939843939844012257242Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0654.7
NC_010830:1543548:1556591155659115582491659Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0654.7
NC_010830:1124500:1137798113779811422794482Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0654.3
NC_010830:1069666:1080998108099810833672370Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein6e-0652.8
NC_010830:1543548:1551922155192215561304209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein9e-0652