Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4633588 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4633588, End: 4634541, Length: 954

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013889:2561381:258152125815212582483963Thioalkalivibrio sp. K90mix chromosome, complete genomeNAD-dependent epimerase/dehydratase6e-56218
NC_011757:748223:7617817617817629501170Methylobacterium chloromethanicum CM4, complete genomeNADH dehydrogenase (ubiquinone)2e-48192
NC_010172:1079127:1092733109273310939021170Methylobacterium extorquens PA1, complete genomeNADH dehydrogenase3e-47188
NC_012808:1220378:1235007123500712361761170Methylobacterium extorquens AM1, complete genomeputative NADH dehydrogenase (ubiquinone) 1 alpha subcomplex4e-47188
NC_010725:1419272:1432693143269314338621170Methylobacterium populi BJ001, complete genomeNADH dehydrogenase1e-46187
NC_020541:268406:290995290995291933939Rhodanobacter sp. 2APBS1, complete genomeputative nucleoside-diphosphate sugar epimerase1e-44180
NC_006677:2012841:2018599201859920196211023Gluconobacter oxydans 621H, complete genomePutative oxidoreductase6e-37154
NC_007517:3524715:354234835423483543232885Geobacter metallireducens GS-15, complete genomeNAD-dependent epimerase/dehydratase7e-35147
NC_011146:4070000:407447340744734075360888Geobacter bemidjiensis Bem, complete genomeNAD-dependent epimerase/dehydratase1e-34147
NC_007802:224470:242686242686243669984Jannaschia sp. CCS1, complete genome3-beta hydroxysteroid dehydrogenase/isomerase5e-34145
NC_020911:4465500:448539344853934486370978Octadecabacter antarcticus 307, complete genomehypothetical protein3e-30132
NC_007798:301456:3164153164153174371023Neorickettsia sennetsu str. Miyayama, complete genomeNADH-ubiquinone oxidoreductase family protein2e-21103
NC_013757:2046000:204608820460882047029942Geodermatophilus obscurus DSM 43160, complete genomeNAD-dependent epimerase/dehydratase3e-1375.9
NC_015954:2289717:229313622931362294032897Halophilic archaeon DL31 chromosome, complete genomeNAD-dependent epimerase/dehydratase8e-1374.7
NC_003919:4258788:426122042612204262164945Xanthomonas axonopodis pv. citri str. 306, complete genomeNAD dependent epimerase/dehydratase/dehydrogenase3e-1272.8
NC_010084:2717443:272357127235712724536966Burkholderia multivorans ATCC 17616 chromosome 1, completeNAD-dependent epimerase/dehydratase5e-1272
NC_010804:782222:800237800237801202966Burkholderia multivorans ATCC 17616 chromosome 1, completeUDP-glucose 4-epimerase5e-1272
NC_014960:1950648:195064819506481951544897Anaerolinea thermophila UNI-1, complete genomeNAD-dependent epimerase/dehydratase family protein5e-1272
NC_015508:251354:263574263574264506933Agrobacterium sp. H13-3 chromosome linear, complete sequenceNADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein2e-1170.1
NC_009921:2565640:258927225892722590156885Frankia sp. EAN1pec, complete genomeNAD-dependent epimerase/dehydratase3e-1169.7
NC_020419:870160:870160870160871137978Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completenucleoside-diphosphate-sugar epimerase4e-1169.3
NS_000191:870160:870160870160871137978Uncultured Termite group 1 bacterium phylotype Rs-D17, completenucleoside-diphosphate-sugar epimerase4e-1169.3
NC_017267:3982619:399060539906053991546942Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeNAD dependent epimerase-dehydratase-dehydrogenase7e-1168.2
NC_010170:5087742:510322551032255104112888Bordetella petrii, complete genomeNDP-sugar oxidoreductase2e-1067
NC_017904:2641270:266112726611272661918792Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein4e-1065.9
NC_015942:2943127:295634329563432957296954Acidithiobacillus ferrivorans SS3 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-1065.9
NC_020388:1100759:114155511415551142457903Natronomonas moolapensis 8.8.11 complete genomearNOG08307 family NADH-binding domain protein6e-1065.1
NC_014394:3036758:304178930417893042733945Gallionella capsiferriformans ES-2 chromosome, complete genomeNAD-dependent epimerase/dehydratase8e-1064.7
NC_010551:846953:864096864096865061966Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase8e-1064.7
NC_014926:165312:185795185795186565771Thermovibrio ammonificans HB-1 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0963.9
NC_008609:3011059:302987130298713030827957Pelobacter propionicus DSM 2379, complete genomeNAD-dependent epimerase/dehydratase2e-0963.5
NC_009379:304222:319022319022319996975Polynucleobacter sp. QLW-P1DMWA-1, complete genomeNAD-dependent epimerase/dehydratase2e-0963.2
NC_016948:1074034:1081888108188810829281041Mycobacterium intracellulare MOTT-64 chromosome, complete genomeoxidoreductase2e-0963.2
NC_014306:4106569:413152641315264132440915Erwinia billingiae Eb661, complete genomeNAD dependent epimerase/dehydratase2e-0963.2
NC_014207:1366766:138228113822811383219939Methylotenera sp. 301 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0963.2
NC_012968:1108687:112730611273061128262957Methylotenera mobilis JLW8, complete genomeNAD-dependent epimerase/dehydratase3e-0962.8
NC_007298:1824335:183264518326451833574930Dechloromonas aromatica RCB, complete genomeNAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase4e-0962.8
NC_008358:1623278:162350116235011624493993Hyphomonas neptunium ATCC 15444, complete genomeputative UDP-glucose 4-epimerase5e-0962
NC_012796:985000:9855489855489870801533Desulfovibrio magneticus RS-1, complete genomeNAD-dependent epimerase/dehydratase family protein5e-0962
NC_015593:2914384:292966629296662930598933Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeNAD-dependent epimerase/dehydratase7e-0961.6
NC_010508:933862:952979952979953944966Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase7e-0961.6
NC_007951:769500:770344770344771300957Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative epimerase/dehydratase8e-0961.6
NC_016010:137658:156591156591157448858Xanthomonas axonopodis pv. citrumelo F1 chromosome, completenucleoside-diphosphate sugar epimerase2e-0860.5
NC_007434:3452985:345846934584693459434966Burkholderia pseudomallei 1710b chromosome I, complete sequenceUDP-glucose 4-epimerase3e-0859.7
NC_006348:2071749:207469720746972075662966Burkholderia mallei ATCC 23344 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase family protein4e-0859.3
NC_008785:914411:931375931375932340966Burkholderia mallei SAVP1 chromosome II, complete sequenceNAD-dependent epimerase/dehydratase family protein4e-0859.3
NC_008836:2780339:279730327973032798268966Burkholderia mallei NCTC 10229 chromosome II, complete sequenceNAD-dependent epimerase/dehydratase family protein4e-0859.3
NC_009080:1815768:181995618199561820921966Burkholderia mallei NCTC 10247 chromosome II, complete sequenceNAD-dependent epimerase/dehydratase family protein4e-0859.3
NC_012881:1062629:1080203108020310817501548Desulfovibrio salexigens DSM 2638, complete genomeNAD-dependent epimerase/dehydratase7e-0858.5
NC_006350:3195165:319959331995933200558966Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative epimerase/dehydratase1e-0757.8
NC_009074:3029716:303414330341433035108966Burkholderia pseudomallei 668 chromosome I, complete sequenceNAD-dependent epimerase/dehydratase family protein1e-0757.8
NC_014734:353159:3693333693333707571425Paludibacter propionicigenes WB4 chromosome, complete genomenad-dependent epimerase/dehydratase1e-0757.8
NC_013959:2892660:289932028993202900273954Sideroxydans lithotrophicus ES-1 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0757.4
NC_009076:3045139:304956730495673050532966Burkholderia pseudomallei 1106a chromosome I, complete sequenceNAD-dependent epimerase/dehydratase family protein2e-0757
NC_013169:87269:1065861065861079831398Kytococcus sedentarius DSM 20547, complete genomepredicted nucleoside-diphosphate sugar epimerase2e-0756.6
NC_014539:860402:882602882602883573972Burkholderia sp. CCGE1003 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase2e-0756.6
NC_017506:2504746:251625225162522517208957Marinobacter adhaerens HP15 chromosome, complete genomeUDP-glucose 4-epimerase4e-0755.8
NC_020134:134875:138415138415139293879Clostridium stercorarium subsp. stercorarium DSM 8532, completeNADH dehydrogenase-like protein4e-0755.8
NC_020304:547036:5649895649895660111023Desulfocapsa sulfexigens DSM 10523, complete genomenucleoside-diphosphate-sugar epimerase4e-0755.8
NC_008391:1768456:1787908178790817891611254Burkholderia cepacia AMMD chromosome 2, complete sequenceNAD-dependent epimerase/dehydratase5e-0755.5
NC_016935:1636278:170386317038631704690828Paenibacillus mucilaginosus 3016 chromosome, complete genomeNmrA family protein6e-0755.1
NC_008596:5577270:558855855885585589319762Mycobacterium smegmatis str. MC2 155, complete genomeconserved secreted protein7e-0755.1
NC_007651:1662558:167814416781441679142999Burkholderia thailandensis E264 chromosome I, complete sequenceepimerase/dehydratase8e-0754.7
NC_010612:5301135:5301135530113553025261392Mycobacterium marinum M, complete genomeoxidoreductase9e-0754.7
NC_013730:4502965:452237345223734523251879Spirosoma linguale DSM 74, complete genomeNmrA family protein9e-0754.7
NC_014973:1767798:177259617725961773558963Geobacter sp. M18 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0654.3
NC_006958:628035:6424086424086440211614Corynebacterium glutamicum ATCC 13032, complete genomenucleoside-diphosphate-sugar epimerase2e-0653.5
NC_003450:627500:6409536409536425601608Corynebacterium glutamicum ATCC 13032, complete genomenucleoside-diphosphate-sugar epimerase2e-0653.5
NC_009337:320389:332958332958333950993Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0653.5
NC_015379:1887275:191240419124041913369966Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,NAD-dependent epimerase/dehydratase3e-0653.1
NC_010552:2541100:2559274255927425605271254Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceNAD-dependent epimerase/dehydratase3e-0652.8
NC_020133:4911044:4911044491104449124351392Mycobacterium liflandii 128FXT, complete genomeoxidoreductase5e-0652.4
NC_009656:1994392:202461820246182025574957Pseudomonas aeruginosa PA7 chromosome, complete genomeUDP-glucose 4-epimerase5e-0652
NC_008554:156744:167617167617168189573Syntrophobacter fumaroxidans MPOB, complete genomeNAD-dependent epimerase/dehydratase6e-0652
NC_013093:2132284:214502821450282145930903Actinosynnema mirum DSM 43827, complete genomeNAD-dependent epimerase/dehydratase1e-0551.2