Pre_GI: BLASTP Hits

Some Help

Query: NC_007951:2087385:2114977 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2114977, End: 2115459, Length: 483

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007951:4741620:475864047586404759164525Burkholderia xenovorans LB400 chromosome 1, complete sequenceputative ISPpu14, transposase Orf16e-71265
NC_010627:233572:238665238665239129465Burkholderia phymatum STM815 plasmid pBPHY02, complete sequencetransposase IS3/IS911 family protein2e-41167
NC_012721:979656:986270986270986725456Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS9115e-30130
NC_012724:2547500:258005125800512580506456Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase IS3/IS9115e-30130
NC_010676:2869936:287185728718572872336480Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-22104
NC_010170:3944228:396887039688703969385516Bordetella petrii, complete genomehypothetical protein4e-1373.9
NC_003047:3360000:336349033634903363951462Sinorhizobium meliloti 1021, complete genomehypothetical protein6e-1270.1
NC_007948:360199:362086362086362589504Polaromonas sp. JS666, complete genometransposase IS3/IS9114e-0857
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein8e-0856.2
NC_010623:1961685:199889019988901999408519Burkholderia phymatum STM815 chromosome 2, complete sequencetransposase IS3/IS911 family protein1e-0755.8
NC_015383:229036:231211231211231741531Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequencetransposase IS3/IS911 family protein2e-0755.1
NC_012791:2423466:245284824528482453291444Variovorax paradoxus S110 chromosome 1, complete genometransposase IS3/IS911 family protein4e-0753.9
NC_010002:3399770:340977834097783410221444Delftia acidovorans SPH-1, complete genometransposase IS3/IS911 family protein2e-0651.2
NC_004578:6334735:635962463596246359956333Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein4e-0650.4
NC_020209:1949500:196102319610231961355333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein9e-0649.3