Pre_GI: BLASTP Hits

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Query: NC_007951:2087385:2093873 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2093873, End: 2097064, Length: 3192

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009445:838281:8440968440968455141419Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein9e-56219
NC_010688:3515885:3536508353650835379561449Xanthomonas campestris pv. campestris, complete genomeputative regulatory protein3e-54214
NC_015138:4103457:4112798411279841142521455Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completepiwi domain-containing protein1e-52209
NC_009434:3434381:3451198345119834526551458Pseudomonas stutzeri A1501, complete genomepiwi domain-containing protein4e-51204
NC_002939:1480474:1489176148917614905971422Geobacter sulfurreducens PCA, complete genomePiwi domain protein6e-45183
NC_017955:3057592:3088946308894630904001455Modestobacter marinus, complete genomehypothetical protein4e-42174
NC_009445:838281:8423578423578440991743Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein8e-33143
NC_015138:4103457:4114249411424941160961848Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein6e-31137
NC_003552:1157294:1169485116948511708851401Methanosarcina acetivorans C2A, complete genomehypothetical protein6e-27123
NC_010995:764567:7684177684177696731257Cellvibrio japonicus Ueda107, complete genomePiwi domain protein3e-26121
NC_010688:3515885:3534535353453535365081974Xanthomonas campestris pv. campestris, complete genomeputative Sir2-family regulator1e-24115
NC_010995:764567:7696707696707715411872Cellvibrio japonicus Ueda107, complete genomehypothetical protein2e-23112
NC_009720:464078:4724454724454738931449Xanthobacter autotrophicus Py2, complete genomehypothetical protein2e-21105
NC_012030:81837:9589895898973221425Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein2e-21105
NC_002678:5020000:5021381502138150228981518Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-20100
NC_002939:1480474:1487423148742314891861764Geobacter sulfurreducens PCA, complete genomehypothetical protein4e-20100
NC_008577:4611431:4631838463183846332801443Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein9e-2099.8
NC_007973:2348481:2360306236030623617571452Ralstonia metallidurans CH34 chromosome 1, complete sequencehypothetical protein1e-1999.8
NC_019012:61360:6866368663701171455Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequenceputative protein y4cC3e-1998.2
NC_014414:1140357:1171084117108411725021419Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein3e-1998.2
NC_009434:3434381:3449330344933034512011872Pseudomonas stutzeri A1501, complete genomehypothetical protein9e-1996.7
NC_009255:1105786:115502611550261155796771Burkholderia vietnamiensis G4 chromosome 2, complete sequencepiwi domain-containing protein2e-1792
NC_010805:575709:606643606643607413771Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein2e-1792
NC_010086:1816378:186789118678911868661771Burkholderia multivorans ATCC 17616 chromosome 2, completePiwi domain protein2e-1792
NC_017955:1667500:1675527167552716769571431Modestobacter marinus, complete genomehypothetical protein2e-1689
NC_012028:336864:3576643576643587911128Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genomehypothetical protein3e-1688.2
NC_020541:4122852:4138231413823141397901560Rhodanobacter sp. 2APBS1, complete genomehypothetical protein7e-1687
NC_008826:84218:9630796307977281422Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein6e-1584
NC_010125:1:2777277743331557Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein6e-1480.5
NC_017955:3057592:3090397309039730922291833Modestobacter marinus, complete genomehypothetical protein5e-1377.4
NC_009783:2306953:2313982231398223166482667Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein7e-1377
NC_015177:1950461:1953953195395319554611509Pedobacter saltans DSM 12145 chromosome, complete genomehypothetical protein8e-1376.6
NC_009511:187508:2027612027612043171557Sphingomonas wittichii RW1 chromosome, complete genomehypothetical protein1e-1276.3
NC_002939:579087:5876525876525890131362Geobacter sulfurreducens PCA, complete genomeconserved hypothetical protein, interruption-N6e-1273.9
NC_012483:729000:7437837437837453361554Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein4e-1171.2
NC_011832:1122268:1133735113373511355281794Candidatus Methanosphaerula palustris E1-9c, complete genomehypothetical protein2e-0862
NC_014639:3520874:3533001353300135347551755Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein8e-0860.5
CP002207:3520874:3533001353300135347551755Bacillus atrophaeus 1942, complete genomehypothetical protein8e-0860.5
NC_009939:16437:2880928809305751767Deinococcus geothermalis DSM 11300 plasmid pDGEO02, completeSir2-like deacetylase4e-0757.8