Pre_GI: BLASTP Hits

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Query: NC_007951:1768236:1794013 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1794013, End: 1796664, Length: 2652

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002929:2589202:2590082259008225918391758Bordetella pertussis Tohama I, complete genome3e-78293
NC_020156:3157899:3178799317879931810572259Nonlabens dokdonensis DSW-6, complete genomemembrane protein containing DUF8933e-46187
NC_015424:3277292:3277292327729232794572166Aeromonas veronii B565 chromosome, complete genomehypothetical protein2e-35151
NC_012880:3125261:3148545314854531507102166Dickeya dadantii Ech703, complete genomehypothetical protein3e-33144
NC_013892:753307:7533077533077554692163Xenorhabdus bovienii SS-2004 chromosome, complete genomeefflux transporter (PET family)4e-32140
NC_010519:275976:2759762759762781412166Haemophilus somnus 2336 chromosome, complete genomehypothetical protein1e-29132
NC_003143:1630000:1630083163008316322212139Yersinia pestis CO92, complete genomehypothetical protein4e-27124
NC_008149:2802392:2851538285153828536762139Yersinia pestis Nepal516, complete genomemembrane protein4e-27124
NC_014618:2989000:3009645300964530117802136Enterobacter cloacae SCF1 chromosome, complete genomeYccS/YhfK family integral membrane protein1e-25119
NC_014752:23601:2360123601257512151Neisseria lactamica ST-640, complete genomehypothetical protein2e-24115
NC_012721:2021885:2025589202558920277392151Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein3e-1274.7
NC_010681:1234500:1254765125476512568642100Burkholderia phytofirmans PsJN chromosome 1, complete sequenceprotein of unknown function DUF893 YccS/YhfK2e-1068.6
NC_012881:3004784:3027117302711730282111095Desulfovibrio salexigens DSM 2638, complete genome4e-0964.3
NC_011000:2732330:2747653274765327498362184Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein9e-0963.2
NC_017342:751496:7514967514967533191824Staphylococcus aureus subsp. aureus TCH60 chromosome, completehypothetical protein3e-0758.2
NC_002952:2653482:2670496267049626723191824Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein3e-0758.2
NC_017337:2588331:2605717260571726075401824Staphylococcus aureus subsp. aureus ED133 chromosome, completemembrane protein3e-0758.2
NC_007622:2501562:2518225251822525202252001Staphylococcus aureus RF122, complete genomeprobable membrane protein7e-0757
NC_017347:2616000:2637563263756326393861824Staphylococcus aureus subsp. aureus T0131 chromosome, completemembrane protein8e-0756.6
NC_014924:2108116:2111928211192821138231896Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomehypothetical protein2e-0655.5