Pre_GI: BLASTP Hits

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Query: NC_007925:3933765:3954226 Rhodopseudomonas palustris BisB18, complete genome

Start: 3954226, End: 3954771, Length: 546

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014834:872924:894178894178894723546Rhodopseudomonas palustris DX-1 chromosome, complete genomeconjugative transfer signal peptidase TraF2e-55214
NC_009720:4406991:444132044413204441865546Xanthobacter autotrophicus Py2, complete genomepeptidase S26C conjugative transfer signal peptidase TraF5e-55213
NC_009720:622262:655257655257655802546Xanthobacter autotrophicus Py2, complete genomeconjugal transfer protein precursor5e-55213
NC_009668:445134:513800513800514345546Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceconjugal transfer protein precursor1e-53208
NC_017249:18493:428124281243357546Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein precursor3e-53207
NC_004463:18497:428204282043365546Bradyrhizobium japonicum USDA 110, complete genomeconjugal transfer protein precursor3e-53207
NC_008686:1472899:147606614760661476608543Paracoccus denitrificans PD1222 chromosome 1, complete sequenceconjugal transfer protein precursor1e-50199
NC_017249:3119000:312008131200813120593513Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-40163
NC_010125:381711:398827398827399456630Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein TraF1e-38158
NC_016027:2512297:251408825140882514717630Gluconacetobacter xylinus NBRC 3288, complete genomeconjugal transfer protein precursor4e-38157
NC_011365:1135750:116187311618731162415543Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative conjugal transfer protein TraF8e-38156
NC_015186:2908387:291388729138872914426540Acidiphilium multivorum AIU301, complete genomeputative conjugal transfer protein TraF3e-30130
NC_015556:2265940:228680622868062287333528Pseudomonas fulva 12-X chromosome, complete genomePeptidase S26, conserved region3e-27120
NC_014100:2782000:279994627999462800458513Caulobacter segnis ATCC 21756 chromosome, complete genomepeptidase S26, conserved region1e-24112
NC_010338:2443765:244452124445212445039519Caulobacter sp. K31, complete genomeType IV secretory pathway protease TraF-like protein3e-23108
NC_009719:1972545:197197919719791972557579Parvibaculum lavamentivorans DS-1 chromosome, complete genomeplasmid transfer protein TraF3e-22104
NC_015381:2859000:289326828932682893870603Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-21102
NC_014910:242845:262595262595263194600Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s26, conserved region protein1e-2099.4
NC_010170:4800000:482394348239434824533591Bordetella petrii, complete genomeconjugal transfer protein TraF3e-2097.8
NC_010943:1332243:134805613480561348631576Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane anchor conjugal transfer protein7e-2096.7
NC_016147:1961000:199013719901371990736600Pseudoxanthomonas spadix BD-a59 chromosome, complete genometype IV secretion system protein8e-2096.7
NC_014414:2540189:254347825434782544173696Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein1e-1996.3
NC_008577:1455000:148007914800791480666588Shewanella sp. ANA-3 chromosome 1, complete sequenceputative conjugal transfer TRAF transmembrane protein3e-1891.3
NC_008752:725189:749121749121749732612Acidovorax avenae subsp. citrulli AAC00-1, complete genomeputative conjugal transfer TRAF transmembrane protein4e-1890.9
NC_003295:2787371:280686628068662807465600Ralstonia solanacearum GMI1000, complete genomePROBABLE CONJUGAL TRANSFER TRAF TRANSMEMBRANE PROTEIN1e-1789
NC_014500:842493:867251867251867796546Dickeya dadantii 3937 chromosome, complete genometype IV secretory pathway, protease TraF3e-1581.3
NC_012982:711122:728334728334728825492Hirschia baltica ATCC 49814, complete genomeplasmid transfer protein TraF8e-1579.7
NC_006526:1976779:199656919965691997324756Zymomonas mobilis subsp. mobilis ZM4, complete genomeconjugal transfer protein1e-1066.2
NC_011059:670345:670345670345671007663Prosthecochloris aestuarii DSM 271, complete genomeputative conjugal transfer protein TraF2e-0962.4
NC_011991:65368:694356943569968534Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceconjugative transfer signal peptidase TraF5e-0960.8
NC_006371:1743982:176795617679561768483528Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical conjugal transfer protein TraF5e-0960.8
NC_015850:110364:110888110888111475588Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein9e-0753.1