Pre_GI: BLASTP Hits

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Query: NC_007613:4156841:4155379 Shigella boydii Sb227, complete genome

Start: 4155379, End: 4156844, Length: 1466

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:5040268:5038805503880550402711467Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane factor of efflux pump2e-145516
NC_009800:4332229:4330766433076643322321467Escherichia coli HS, complete genomeRND efflux system, outer membrane lipoprotein, NodT family3e-145515
CP002185:4566150:4564687456468745661531467Escherichia coli W, complete genomepredicted outer membrane factor of efflux pump3e-145515
NC_007509:3668:4185341853433371485Burkholderia sp. 383 chromosome 3, complete sequenceRND efflux system, outer membrane lipoprotein, NodT family2e-66253
NC_014722:1084616:1107824110782411093291506Burkholderia rhizoxinica HKI 454, complete genomefusaric acid resistance protein fusA1e-1378.2
NC_005085:786851:7895577895577909871431Chromobacterium violaceum ATCC 12472, complete genomeprobable outer membrane multidrug resistance lipoprotein5e-1376.3
NC_015727:1357095:1369543136954313709641422Cupriavidus necator N-1 plasmid BB1p, complete sequencefusaric acid resistance protein FusA1e-1275.5
NC_007498:3399478:3399478339947834010791602Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein3e-1067
NC_016745:123772:1237721237721251241353Oceanimonas sp. GK1 chromosome, complete genomeouter membrane protein6e-1066.2
NC_003296:1980687:2006641200664120080921452Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE OUTER MEMBRANE DRUG EFFLUX LIPOPROTEIN7e-1065.9
NC_020829:5174354:5194941519494151964221482Pseudomonas denitrificans ATCC 13867, complete genomeouter membrane protein4e-0963.2
NC_015376:903939:9066069066069081621557Burkholderia gladioli BSR3 chromosome chromosome 2, completeRND efflux system, outer membrane lipoprotein, NodT family protein3e-0860.5
NC_015850:1947000:1989809198980919911911383Acidithiobacillus caldus SM-1 chromosome, complete genometripartite multidrug resistance system outer membrane protein4e-0860.1
NC_011770:3163480:3198396319839631998201425Pseudomonas aeruginosa LESB58, complete genomeputative outer membrane protein precursor7e-0858.9
NC_010125:2884762:2940737294073729421461410Gluconacetobacter diazotrophicus PAl 5, complete genomeputative multidrug efflux MFS outer membrane protein2e-0757.8
NC_016027:1647110:1652943165294316545831641Gluconacetobacter xylinus NBRC 3288, complete genomesecretion system type I outer membrane efflux pump lipoprotein NodT3e-0757
NC_011365:1596652:1596652159665215980611410Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeNodT family RND efflux system, outer membrane lipoprotein7e-0755.8