Pre_GI: BLASTP Hits

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Query: NC_007613:2699500:2701170 Shigella boydii Sb227, complete genome

Start: 2701170, End: 2701613, Length: 444

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3823347:382774638277463828189444Escherichia coli O26:H11 str. 11368 chromosome, complete genomeFe-S metabolism protein3e-73273
NC_010498:3023442:302784230278423028285444Escherichia coli SMS-3-5, complete genomecysteine desulfurase, sulfur acceptor subunit CsdE2e-72270
NC_011745:3197584:320198332019833202426444Escherichia coli ED1a chromosome, complete genomeputative Fe-S metabolism protein (sufE-like)8e-72268
NC_004459:1794540:180130518013051801733429Vibrio vulnificus CMCP6 chromosome I, complete sequenceSufE protein probably involved in Fe-S center assembly1e-22105
NC_016642:2573481:258976825897682590199432Pseudovibrio sp. FO-BEG1 chromosome, complete genomeFe-S metabolism associated SufE6e-1373.2
NC_007493:546000:564243564243564671429Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceProbable SufE protein9e-1372.4
NC_008260:2142311:214676021467602147212453Alcanivorax borkumensis SK2, complete genomeFe-S metabolism associated domain protein1e-1272
NC_016632:830000:838383838383838814432Serratia symbiotica str. 'Cinara cedri' chromosome, completecysteine desulfuration protein SufE1e-1168.6
NC_011565:423000:423764423764424186423Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,cysteine desulfuration protein SufE1e-1065.5
NC_010172:480000:480989480989481417429Methylobacterium extorquens PA1, complete genomeFe-S metabolism associated SufE2e-0961.2
NC_016513:1924242:193085819308581931238381Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeFe-S metabolism associated domain subfamily5e-0959.7
NC_013416:1588369:159492815949281595308381Aggregatibacter actinomycetemcomitans D11S-1, complete genomeFe-S metabolism associated domain subfamily5e-0959.7
NC_012982:1282856:129912312991231299560438Hirschia baltica ATCC 49814, complete genomeFe-S metabolism associated SufE3e-0754.3
NC_015737:449914:469166469166469645480Clostridium sp. SY8519, complete genomehypothetical protein8e-0752.4
NC_007775:2546833:255199525519952552438444Synechococcus sp. JA-3-3Ab, complete genomeFe-S metabolism protein, SufE family3e-0650.8