Pre_GI: BLASTP Hits

Some Help

Query: NC_007606:1999870:2002056 Shigella dysenteriae Sd197, complete genome

Start: 2002056, End: 2002277, Length: 222

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015563:733704:734033734033734377345Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein1e-1478.6
NC_012962:4942000:494208049420804942439360Photorhabdus asymbiotica, complete genomehypothetical protein2e-1477.8
NC_006513:38818:534235342353761339Azoarcus sp. EbN1, complete genomehypothetical protein1e-1375.1
NC_013889:1159343:117823711782371178581345Thioalkalivibrio sp. K90mix chromosome, complete genomeprotein of unknown function DUF8911e-1374.7
NC_010577:1188438:118810311881031188441339Xylella fastidiosa M23, complete genomeprotein of unknown function DUF8913e-1373.6
NC_004556:1178897:117856211785621178900339Xylella fastidiosa Temecula1, complete genomehypothetical protein3e-1373.6
NC_007614:109000:123482123482123838357Nitrosospira multiformis ATCC 25196 chromosome 1, completeProtein of unknown function DUF8913e-1270.5
NC_014972:409884:425601425601425927327Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein2e-1064.3
NC_014032:825793:892517892517892864348Salinibacter ruber M8 chromosome, complete genomehypothetical protein3e-0857
NC_011770:2499432:254574125457412546067327Pseudomonas aeruginosa LESB58, complete genomehypothetical protein9e-0855.5
NC_010397:1751067:177640117764011776733333Mycobacterium abscessus chromosome Chromosome, complete sequencehypothetical protein1e-0755.5