Pre_GI: BLASTP Hits

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Query: NC_007384:2251792:2270409 Shigella sonnei Ss046, complete genome

Start: 2270409, End: 2272184, Length: 1776

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2341127:2360435236043523619611527Shigella sonnei 53G, complete genomehypothetical protein2e-178626
NC_016822:2341127:235977823597782360311534Shigella sonnei 53G, complete genomehypothetical protein1e-93344
NC_009925:4044691:4063500406350040657732274Acaryochloris marina MBIC11017, complete genomehypothetical protein1e-24115
NC_007333:1677406:1687066168706616892732208Thermobifida fusca YX, complete genomehypothetical protein2e-21104
NC_015577:1682970:1684166168416616866372472Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein3e-21103
NC_014165:2533040:2533040253304025351722133Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein1e-20102
NC_014328:680085:7021357021357039431809Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein4e-20100
NC_009617:3184924:3191010319101031934572448Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein8e-1995.9
NC_014210:5409324:5425068542506854275632496Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein1e-1791.7