Pre_GI: BLASTP Hits

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Query: NC_007384:1355060:1368306 Shigella sonnei Ss046, complete genome

Start: 1368306, End: 1369148, Length: 843

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1339058:135115413511541351996843Shigella sonnei 53G, complete genomehypothetical protein2e-167587
NC_013364:2355298:236165623616562362498843Escherichia coli O111:H- str. 11128, complete genomehypothetical protein9e-162569
NC_013361:2591829:259818725981872599029843Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein9e-162569
NC_011741:1978500:198489219848921985701810Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-154544
CU928160:1978500:198489219848921985701810Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-154544
NC_014960:1380500:139623413962341397046813Anaerolinea thermophila UNI-1, complete genomehypothetical protein2e-0859.7
NC_014206:1745203:175379517537951754589795Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein9e-0754.3