Pre_GI: BLASTP Hits

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Query: NC_007347:3204637:3227243 Ralstonia eutropha JMP134 chromosome 1, complete sequence

Start: 3227243, End: 3227854, Length: 612

Host Lineage: Cupriavidus pinatubonensis; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is found in both soil and water and has great potential for use in bioremediation as it is capable of degrading a large list of pollutants including chlorinated aromatic compounds. The bacterium can utilize hydrogen, carbon dioxide, as well as organic compounds for growth and is a model organism for hydrogen oxidation as it can grow on hydrogen as the sole energy source. It was originally isolated due to its ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid, which is due to the degradative functions being encoded on a plasmid (pJP4). Metabolically versatile bacterium. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010645:406794:450383450383450994612Bordetella avium 197N, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase3e-57221
NC_018080:5070687:507373150737315074297567Pseudomonas aeruginosa DK2 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-56218
NC_016616:134449:135991135991136563573Dechlorosoma suillum PS chromosome, complete genomenegative regulator of beta-lactamase expression2e-55215
NC_020829:1068438:108490810849081085471564Pseudomonas denitrificans ATCC 13867, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase9e-55213
NC_009439:860571:878735878735879286552Pseudomonas mendocina ymp, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase3e-54211
NC_013959:2666321:267620226762022676738537Sideroxydans lithotrophicus ES-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD1e-53209
NC_011901:625712:664744664744665313570Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeN-acetyl-anhydromuranmyl-L-alanine amidase3e-53207
NC_008344:554229:557692557692558237546Nitrosomonas eutropha C91, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD7e-53206
NC_012214:897206:902048902048902617570Erwinia pyrifoliae Ep1/96, complete genomeN-acetylmuramyl L-alanine amydase9e-53206
NC_015410:969526:986337986337986888552Pseudomonas mendocina NK-01 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-52206
NC_021066:3201500:320667332066733207236564Raoultella ornithinolytica B6, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-52205
NC_013971:817284:821377821377821946570Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramyl l-alanine amydase1e-51202
NC_013961:2932348:294943629494362950005570Erwinia amylovora, complete genomeProtein ampD1e-51202
NC_010694:891967:896775896775897350576Erwinia tasmaniensis, complete genomeN-acetylmuramyl L-alanine amydase2e-51201
NC_018868:3943088:396230739623073962897591Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase8e-51199
NC_011662:1160887:118389311838931184420528Thauera sp. MZ1T, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-50198
NC_002928:507749:532483532483533064582Bordetella parapertussis 12822, complete genomeN-acetylmuramoyl-L-alanine amidase1e-49196
NC_017223:51180:743587435874939582Bordetella pertussis CS chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-49195
NC_002929:52500:743587435874939582Bordetella pertussis Tohama I, complete genomeN-acetylmuramoyl-L-alanine amidase1e-49195
NC_002927:506183:533836533836534417582Bordetella bronchiseptica RB50, complete genomeN-acetylmuramoyl-L-alanine amidase4e-49194
NC_007912:1111093:113516711351671135766600Saccharophagus degradans 2-40, complete genomeProlyl-tRNA synthetase1e-48192
NC_009665:4675289:468353546835354684098564Shewanella baltica OS185 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-47189
NC_011663:4579777:458443845844384585001564Shewanella baltica OS223 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-46186
NC_015850:2451957:245308224530822453636555Acidithiobacillus caldus SM-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD3e-46184
NC_008321:458811:472477472477473016540Shewanella sp. MR-4, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD4e-44177
NC_012779:2127542:213393121339312134815885Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD8e-1580.1
NC_013961:1891000:190828819082881909157870Erwinia amylovora, complete genomeprobable N-acetylmuramoyl-L-alanine amidase2e-1479.3
NC_013971:1927510:194581519458151946684870Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1479.3
NC_013517:2633574:265363326536332654463831Sebaldella termitidis ATCC 33386, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD6e-1477.4
NC_014532:1481787:150366215036621504546885Halomonas elongata DSM 2581, complete genomeN-acetylmuramoyl-L-alanine amidase domain protein4e-1271.2
NC_016816:2508204:251215125121512513044894Pantoea ananatis LMG 5342, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD2e-1169.3
NC_013956:1994970:200984520098452010738894Pantoea ananatis LMG 20103 chromosome, complete genomeYbjR2e-1169.3
NC_010067:892729:912875912875913576702Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-1167.4
NC_012779:3316877:332413933241393324909771Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD2e-1065.5
NC_014932:1232346:126256212625621263332771Bartonella clarridgeiae 73, complete genomeN-acetylmuramoyl-L-alanine amidase amiD precursor3e-1065.1
NC_002929:2589202:258920225892022590029828Bordetella pertussis Tohama I, complete genomeputative exported hydrolase8e-1063.5
NC_013595:3712257:3725059372505937265011443Streptosporangium roseum DSM 43021, complete genomeNegative regulator of beta-lactamase expression- like protein1e-0963.5
NC_013508:3188978:321210932121093212879771Edwardsiella tarda EIB202, complete genomeprobable N-acetylmuramoyl-L-alanine amidase1e-0963.2
NC_016609:6177651:6199294619929462021672874Niastella koreensis GR20-10 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD1e-0859.7
NC_016113:1143580:1146265114626511483162052Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceprotein (fragment)2e-0859.3
NC_019907:845663:849699849699850544846Liberibacter crescens BT-1 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-0653.1
NC_014924:936158:9553659553659600414677Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-0652.8