Pre_GI: BLASTP Hits

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Query: NC_006905:4638707:4649947 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 4649947, End: 4650324, Length: 378

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:472722747272274727640414Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-64244
NC_011283:4438500:445869544586954459117423Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein9e-46181
NC_013941:3300000:333109133310913331561471Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-44178
NC_002695:3468873:349335934933593493772414Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-43174
NC_013008:3525428:355232035523203552733414Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-43174
NC_002655:3538656:356064335606433561113471Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-43174
NC_011353:3573641:359759535975953598065471Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-43174
NC_012917:1840172:185541518554151855825411Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein8e-33138
NC_013421:1819036:185411818541181854528411Pectobacterium wasabiae WPP163, complete genomehypothetical protein3e-32137
NC_016816:1545354:156135815613581561765408Pantoea ananatis LMG 5342, complete genomehypothetical protein7e-0649.3