Pre_GI: BLASTP Hits

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Query: NC_006905:3717306:3725471 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 3725471, End: 3726424, Length: 954

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021066:601029:606616606616607596981Raoultella ornithinolytica B6, complete genomeXylA6e-65247
NC_014839:253961:282205282205283197993Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceXylose isomerase domain-containing protein TIM barrel3e-49195
NC_009921:465683:483525483525484421897Frankia sp. EAN1pec, complete genomeXylose isomerase domain protein TIM barrel1e-46187
NC_015588:1847500:186627718662771867266990Isoptericola variabilis 225 chromosome, complete genomeXylose isomerase domain-containing protein TIM barrel3e-46186
NC_007644:2099878:2114823211482321159651143Moorella thermoacetica ATCC 39073, complete genomeXylose isomerase-like TIM barrel8e-2097.8
NC_000853:1071078:1086305108630510874561152Thermotoga maritima MSB8, complete genomesugar isomerase8e-1271.2
NC_014622:2477019:2485604248560424868241221Paenibacillus polymyxa SC2 chromosome, complete genomerhamnose isomerase like protein1e-1170.9
NC_010407:151599:1653021653021664951194Clavibacter michiganensis subsp. sepedonicus chromosome, completexylose isomerase2e-1170.1
NC_013501:777947:7966897966897979751287Rhodothermus marinus DSM 4252, complete genomeXylose isomerase domain protein TIM barrel3e-1169.3
NC_014212:670996:6832496832496844121164Meiothermus silvanus DSM 9946 chromosome, complete genomexylose isomerase1e-1067.4
NC_014246:1787154:1792799179279917939651167Mobiluncus curtisii ATCC 43063 chromosome, complete genomexylose isomerase3e-1066.2
NC_008010:321561:3369283369283381391212Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceXylose isomerase3e-1066.2
NC_013205:747502:7531207531207543491230Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,L-rhamnose isomerase4e-1065.9
NC_015514:3351052:3361714336171433628831170Cellulomonas fimi ATCC 484 chromosome, complete genomeL-rhamnose isomerase2e-0653.5
NC_015957:3342169:3349576334957633507361161Streptomyces violaceusniger Tu 4113 chromosome, complete genomeL-rhamnose isomerase2e-0653.5