Pre_GI: BLASTP Hits

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Query: NC_006177:1060428:1081321 Symbiobacterium thermophilum IAM 14863, complete genome

Start: 1081321, End: 1082475, Length: 1155

Host Lineage: Symbiobacterium thermophilum; Symbiobacterium; Shewanellaceae; Clostridiales; Firmicutes; Bacteria

General Information: This symbiotic and thermophilic bacterium was discovered by screening for thermostable tryptanophases in Japanese compost. Cultured growth of this organism requires the presence of another bacterial species, such as a Bacillus or Escherichia coli, which provides diffusable metabolites required for its growth. Pure cultures can be obtained by growing Symbiobacterium thermophilum in a bioreactor, separated from its symbiotic counterpart by a dialysis membrane. Because of its symbiotic nature, it cannot be cultured with conventional methods. Despite a negative reaction for gram stain, this species is placed with the gram-positive bacteria based on 16s phylogenetic analysis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011296:530408:5316835316835328551173Thermodesulfovibrio yellowstonii DSM 11347, complete genometRNA pseudouridine synthase D4e-69261
NC_014148:4037357:4037357403735740386551299Planctomyces limnophilus DSM 3776 chromosome, complete genometRNA pseudouridine synthase D TruD5e-39162
NC_000961:1366000:1367672136767213689011230Pyrococcus horikoshii OT3, complete genometRNA pseudouridine synthase D3e-21102
NC_000868:571500:5890735890735902931221Pyrococcus abyssi GE5, complete genometRNA pseudouridine synthase D1e-1998.2
NC_003413:1448377:1451335145133514525581224Pyrococcus furiosus DSM 3638, complete genometRNA pseudouridine synthase D1e-1997.8
NC_015474:105075:1080311080311092451215Pyrococcus sp. NA2 chromosome, complete genometRNA pseudouridine synthase D3e-1996.3
NC_005213:202400:2657572657572668811125Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein1e-1481.3
NC_016051:1129154:1133554113355411348011248Thermococcus sp. AM4 chromosome, complete genometRNA pseudouridine synthase D3e-1479.7
NC_013158:2714778:2736794273679427381521359Halorhabdus utahensis DSM 12940, complete genometRNA pseudouridine synthase D TruD1e-1274.7
NC_010085:1090000:1092421109242110936171197Nitrosopumilus maritimus SCM1, complete genometRNA pseudouridine synthase D TruD2e-1170.9
NC_010995:2547164:2556444255644425574541011Cellvibrio japonicus Ueda107, complete genometRNA pseudouridine synthase D5e-1065.9
NC_014761:1196669:1213985121398512150611077Oceanithermus profundus DSM 14977 chromosome, complete genometRNA pseudouridine synthase d trud8e-0962
NC_016445:2938887:2972303297230329733881086Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetRNA pseudouridine synthase D4e-0859.7
NC_014935:1223817:1222711122271112238201110Nitratifractor saLSUginis DSM 16511 chromosome, complete genometRNA pseudouridine synthase d trud6e-0858.9
NC_012918:1697860:1701910170191017031061197Geobacter sp. M21 chromosome, complete genometRNA pseudouridine synthase D TruD3e-0756.6
NC_004578:1719849:1723431172343117244891059Pseudomonas syringae pv. tomato str. DC3000, complete genometRNA pseudouridine synthase D1e-0654.7
NC_014973:3151701:3165220316522031664161197Geobacter sp. M18 chromosome, complete genometRNA pseudouridine synthase D TruD8e-0652