Pre_GI: BLASTP Hits

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Query: NC_005244:37546:55472 Pseudomonas sp. ND6 plasmid pND6-1, complete sequence

Start: 55472, End: 55786, Length: 315

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. These bacteria share a high degree of homology to Pseudomonas aeruginosa strains. However, key virulence factors like certain exotoxin genes and type III secretion systems are absent, which makes these bacteria non-pathogenic in nature. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008781:2611702:262417626241762624514339Polaromonas naphthalenivorans CJ2, complete genomeRieske (2Fe-2S) domain protein2e-44177
NC_008782:3252092:326167032616703261984315Acidovorax sp. JS42, complete genomeRieske (2Fe-2S) domain protein5e-43172
NC_015138:201323:215722215722216051330Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completerieske (2Fe-2S) iron-sulfur domain-containing protein2e-35147
NC_008752:166877:186268186268186597330Acidovorax avenae subsp. citrulli AAC00-1, complete genomeRieske (2Fe-2S) domain protein2e-34144
NC_015727:1294532:132613113261311326454324Cupriavidus necator N-1 plasmid BB1p, complete sequencenaphthalene 1,2-dioxygenase system ferredoxin subunit2e-32137
NC_014641:20103:366593665936973315Achromobacter xylosoxidans A8 plasmid pA81, complete sequencerieske [2Fe-2S] domain-containing protein 88e-32135
NC_015554:4002952:401324540132454013565321Alteromonas sp. SN2 chromosome, complete genomeputative ferredoxin1e-26118
NC_011666:1572487:158788615878861588209324Methylocella silvestris BL2, complete genomeRieske (2Fe-2S) domain protein5e-25112
NC_016147:3023180:304527530452753045649375Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein5e-2096.3
NC_015726:1813961:181578118157811816155375Cupriavidus necator N-1 chromosome 1, complete sequencerieske (2Fe-2S) iron-sulfur domain containing protein1e-1995.1
NC_015596:1511961:152941615294161529733318Sinorhizobium meliloti AK83 chromosome 2, complete sequenceRieske (2Fe-2S) domain-containing protein MocE subfamily2e-1994
NC_014834:614890:652509652509652850342Rhodopseudomonas palustris DX-1 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain3e-1993.6
NC_017323:689512:707836707836708153318Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequenceRieske (2Fe-2S) domain protein, MocE subfamily4e-1993.2
NC_009620:1504933:152427915242791524596318Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceRieske (2Fe-2S) domain-containing protein2e-1890.9
NC_007347:1596040:160428016042801604612333Ralstonia eutropha JMP134 chromosome 1, complete sequenceRieske (2Fe-2S) region3e-1890.5
NC_016585:1004000:101759910175991017913315Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceputative aromatic-ring-hydroxylating dioxygenase, ferredoxin subunit4e-1890.1
NC_014640:4193193:421615542161554216475321Achromobacter xylosoxidans A8 chromosome, complete genome2-hydroxybenzoate 5-hydroxylase ferredoxin7e-1889
NC_009512:3282500:328397632839763284332357Pseudomonas putida F1, complete genomeRieske (2Fe-2S) domain protein3e-1787
NC_016625:171341:195984195984196307324Burkholderia sp. YI23 chromosome 2, complete sequenceferredoxin4e-1786.7
NC_015856:439795:442187442187442501315Collimonas fungivorans Ter331 chromosome, complete genomenaphthalene dioxygenase ferredoxin1e-1685.1
NC_010625:1370462:139455913945591394870312Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceRieske (2Fe-2S) domain protein, MocE subfamily1e-1581.6
NC_016147:1825827:183512418351241835453330Pseudoxanthomonas spadix BD-a59 chromosome, complete genomebiphenyl 2,3-dioxygenase ferredoxin subunit (BphA3)1e-1581.6
NC_010170:3944228:394958739495873949910324Bordetella petrii, complete genomeprobable phenylpropionate dioxygenase ferredoxin subunit2e-1374.3
NC_009512:3251545:327073132707313271054324Pseudomonas putida F1, complete genomeRieske (2Fe-2S) domain protein4e-1373.2
NC_016147:1788219:179939717993971799717321Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeferredoxin component of carbazole5e-1373.2
NC_016147:2964178:297981329798132980133321Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeRieske (2Fe-2S) protein6e-1372.8
NC_015563:1951368:195782219578221958163342Delftia sp. Cs1-4 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain-containing protein5e-1269.7
NC_015312:848403:861181861181861507327Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain-containing protein2e-1168.2
NC_016147:1788219:179562517956251795957333Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeRieske (2Fe-2S) domain-containing protein2e-1167.8
NC_008699:2260606:228461522846152284965351Nocardioides sp. JS614, complete genomeRieske (2Fe-2S) domain protein2e-1167.8
NC_012521:148886:172176172176172499324Rhodococcus opacus B4 plasmid pROB02, complete sequencebenzene dioxygenase ferredoxin subunit2e-1064.7
NC_011832:1283521:131048913104891310902414Candidatus Methanosphaerula palustris E1-9c, complete genomeRieske (2Fe-2S) domain protein7e-1062.8
NC_009712:2362218:238186723818672382292426Candidatus Methanoregula boonei 6A8, complete genomeRieske (2Fe-2S) domain-containing protein3e-0960.8
NC_015387:1898496:190378219037821904102321Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeRieske (2Fe-2S) iron-sulfur domain protein3e-0960.5
NC_021150:2315362:233359023335902333916327Azotobacter vinelandii CA6, complete genomeassimilatory nitrite reductase, small subunit3e-0857.4
NC_012560:2315350:233357823335782333904327Azotobacter vinelandii DJ, complete genomeassimilatory nitrite reductase, small subunit3e-0857.4
NC_008726:4725389:474017847401784740561384Mycobacterium vanbaalenii PYR-1, complete genomeRieske (2Fe-2S) domain protein4e-0856.6
NC_006834:1414113:143414314341431434472330Xanthomonas oryzae pv. oryzae KACC10331, complete genomebenzene 1,2-dioxygenase ferredoxin protein6e-0856.2
NC_007705:1388607:140853114085311408860330Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomebenzene 1,2-dioxygenase ferredoxin protein6e-0856.2
NC_010717:3933485:393746939374693937798330Xanthomonas oryzae pv. oryzae PXO99A, complete genomebenzene 1,2-dioxygenase ferredoxin protein6e-0856.2
NC_007973:1411714:142950314295031429838336Ralstonia metallidurans CH34 chromosome 1, complete sequenceRieske (2Fe-2S) region8e-0855.8
NC_016147:730810:739801739801740136336Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeToluene-4-monooxygenase system protein C1e-0755.1
NC_008825:846916:857944857944858279336Methylibium petroleiphilum PM1, complete genomebenzene/toluene monooxygenase ferredoxin subunit1e-0755.1
NC_008825:2700617:270866727086672709002336Methylibium petroleiphilum PM1, complete genomebenzene/toluene monooxygenase ferredoxin subunit1e-0755.1
NC_014483:3235968:324084932408493241178330Paenibacillus polymyxa E681 chromosome, complete genomeAssimilatory nitrite reductase [NAD(P)H] small subunit2e-0754.3
NC_015723:961909:9661999661999677371539Cupriavidus necator N-1 chromosome 2, complete sequencerhodocoxin reductase ThcD2e-0754.3
NC_015675:4526500:4527889452788945294331545Mesorhizobium opportunistum WSM2075 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase3e-0753.9
NC_016935:2347691:234769123476912348098408Paenibacillus mucilaginosus 3016 chromosome, complete genomeRieske iron-sulfur domain-containing protein6e-0752.8
NC_013791:1082951:108717610871761087502327Bacillus pseudofirmus OF4 chromosome, complete genomeassimilatory nitrite reductase [NAD(P)H] small subunit8e-0752.4
NC_007406:632436:6448716448716463911521Nitrobacter winogradskyi Nb-255, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase1e-0652
NC_007168:665284:672880672880673194315Staphylococcus haemolyticus JCSC1435, complete genomeassimilatory nitrite reductase1e-0651.6
NC_008536:2079052:2081772208177220828631092Solibacter usitatus Ellin6076, complete genomeRieske (2Fe-2S) domain protein1e-0651.6
NC_014221:1541517:1563811156381115653941584Truepera radiovictrix DSM 17093 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase1e-0651.6
NC_009464:225400:246917246917247201285Uncultured methanogenic archaeon RC-I, complete genome2Fe-2S Rieske-type ferredoxin2e-0651.2
NC_013745:371322:375098375098375463366Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completeRieske (2Fe-2S) iron-sulphur domain protein3e-0650.4
NC_014829:988980:997138997138997461324Bacillus cellulosilyticus DSM 2522 chromosome, complete genomenitrite reductase (NAD(P)H), small subunit3e-0650.4
NC_016941:2395502:240726624072662407580315Staphylococcus aureus subsp. aureus MSHR1132, complete genomeassimilatory nitrite reductase small subunit6e-0649.7
NC_017338:2456000:246654724665472466861315Staphylococcus aureus subsp. aureus JKD6159 chromosome, completenitrite reductase small subunit5e-0649.7
NC_009464:225400:245892245892246230339Uncultured methanogenic archaeon RC-I, complete genome2Fe-2S Rieske-type ferredoxin8e-0649.3
NC_007622:2399347:241030224103022410616315Staphylococcus aureus RF122, complete genomeassimilatory nitrite reductase6e-0649.3
NC_002951:2448000:245819224581922458506315Staphylococcus aureus subsp. aureus COL, complete genomenitrite reductase [NAD(P)H], small subunit6e-0649.3
NC_007793:2510801:252175825217582522072315Staphylococcus aureus subsp. aureus USA300, complete genomenitrite reductase [NAD(P)H], small subunit6e-0649.3
NC_010079:2510951:252190825219082522222315Staphylococcus aureus subsp. aureus USA300_TCH1516, completenitrite reductase (NAD(P)H) small subunit6e-0649.3
NC_007795:2455468:246885724688572469171315Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeassimilatory nitrite reductase [NAD(P)H], small subunit, putative6e-0649.3
NC_009641:2513300:252669025266902527004315Staphylococcus aureus subsp. aureus str. Newman chromosome,assimilatory nitrite reductase [NAD(P)H], small subunit6e-0649.3
NC_017347:2511783:252274025227402523054315Staphylococcus aureus subsp. aureus T0131 chromosome, completeAssimilatory nitrite reductase [NAD(P)H], small subunit6e-0649.3
NC_017341:2544327:255528425552842555598315Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,nitrite reductase small subunit6e-0649.3
NC_017337:2478877:249072624907262491040315Staphylococcus aureus subsp. aureus ED133 chromosome, completeassimilatory nitrite reductase6e-0649.3
NC_016928:2411486:242244224224422422756315Staphylococcus aureus subsp. aureus M013 chromosome, completeNitrite reductase small subunit6e-0649.3
NC_016912:2329113:234007023400702340384315Staphylococcus aureus subsp. aureus VC40 chromosome, completeassimilatory nitrite reductase small subunit6e-0649.3
NC_017342:857630:865565865565865879315Staphylococcus aureus subsp. aureus TCH60 chromosome, completenitrite reductase small subunit9e-0648.9
NC_002952:2550500:256262525626252562939315Staphylococcus aureus subsp. aureus MRSA252, complete genomeassimilatory nitrite reductase small subunit9e-0648.9
NC_017353:646195:651876651876652190315Staphylococcus lugdunensis N920143, complete genomeassimilatory nitrite reductase small subunit9e-0648.9
NC_012121:1894148:190337419033741903688315Staphylococcus carnosus subsp. carnosus TM300, complete genomeNirD protein9e-0648.9