Pre_GI: BLASTP Hits

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Query: NC_005244:37546:53213 Pseudomonas sp. ND6 plasmid pND6-1, complete sequence

Start: 53213, End: 54172, Length: 960

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. These bacteria share a high degree of homology to Pseudomonas aeruginosa strains. However, key virulence factors like certain exotoxin genes and type III secretion systems are absent, which makes these bacteria non-pathogenic in nature. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D9e-48190
NC_008782:2683989:2685104268510426876172514Acidovorax sp. JS42, complete genomeDNA ligase (ATP)1e-44180
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D4e-44178
NC_010001:2125500:2128734212873421311752442Clostridium phytofermentans ISDg, complete genomeDNA ligase D2e-35149
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D1e-33144
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module2e-31136
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-24111
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein1e-23110
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase3e-23108
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D9e-23107
NC_015675:4442000:446120844612084462071864Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP dependent DNA ligase6e-21101
NC_014923:3930669:394222939422293943092864Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase8e-2098.2
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase9e-2097.8
NC_014923:4017575:402602940260294026889861Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase6e-1891.7
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase9e-1891.3
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase1e-1790.5
NC_002678:6608697:662255766225576623438882Mesorhizobium loti MAFF303099, complete genomesimilar to ATP-dependent DNA ligase2e-1790.1
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase3e-1479.7
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein4e-1479.3
NC_004463:8401060:845029484502948450881588Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase4e-1375.5
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase1e-1274.3
NC_004463:5110709:511634551163455116887543Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase2e-1273.6
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein4e-1169.3
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB4e-1169.3
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase4e-1169.3
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein2e-1067
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase2e-0963.5
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD2e-0963.2
NC_002678:3701500:373418737341873734645459Mesorhizobium loti MAFF303099, complete genomesimilar to part of DNA ligase2e-0963.2
NC_008271:140846:140846140846141817972Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceATP-dependent DNA ligase6e-0962
NC_013131:1593840:1622309162230916238921584Catenulispora acidiphila DSM 44928, complete genomeDNA ligase I, ATP-dependent Dnl11e-0860.8
NC_017249:2572000:257928825792882579716429Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-0859.7
NC_014148:4037357:4055204405520440569581755Planctomyces limnophilus DSM 3776 chromosome, complete genomeATP dependent DNA ligase4e-0859.3
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase9e-0857.8
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent2e-0653.1
NC_014820:1057826:1077557107755710792901734Cenarchaeum symbiosum A, complete genomeATP-dependent DNA ligase5e-0652.4