Pre_GI: BLASTP Hits

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Query: NC_005244:37546:44886 Pseudomonas sp. ND6 plasmid pND6-1, complete sequence

Start: 44886, End: 45161, Length: 276

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. In the latter form the single cell can display an extremely high motility due to its polar flagella. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Typically they are plant pathogens, although several strains are pathogenic to humans. These bacteria share a high degree of homology to Pseudomonas aeruginosa strains. However, key virulence factors like certain exotoxin genes and type III secretion systems are absent, which makes these bacteria non-pathogenic in nature. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014640:4293430:433981043398104340109300Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein3e-24110
NC_011601:717072:722437722437722721285Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-22104
NC_013364:2645438:265878526587852659069285Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-21101
NC_012967:786534:789498789498789782285Escherichia coli B str. REL606 chromosome, complete genomephage related protein4e-21100
NC_007946:2625461:263699326369932637277285Escherichia coli UTI89, complete genomehypothetical protein4e-21100
NC_007946:1239278:124319812431981243527330Escherichia coli UTI89, complete genomehypothetical protein2e-21100
NC_011742:1177946:118417411841741184503330Escherichia coli S88 chromosome, complete genomehypothetical protein2e-21100
NC_011205:609464:619272619272619553282Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-2199.8
NC_002655:1332961:133296113329611333326366Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by bacteriophage BP-933W5e-2199.8
NC_016860:364981:370489370489370773285Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-2199