Pre_GI: BLASTP Hits

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Query: NC_005126:142500:159681 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 159681, End: 160592, Length: 912

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:142500:155251155251155439189Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-29130
NC_015634:2445396:246029224602922461155864Bacillus coagulans 2-6 chromosome, complete genomeDNA-3-methyladenine glycosylase II1e-1997.4
NC_016023:2163000:216489121648912165754864Bacillus coagulans 36D1 chromosome, complete genomeHhH-GPD family protein2e-1893.2
NC_009328:448224:450895450895451761867Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA-3-methyladenine glycosylase II1e-1790.9
NC_017190:794820:798264798264799196933Bacillus amyloliquefaciens LL3 chromosome, complete genomeDNA-modified purine glycosidase5e-1788.6
NC_017191:754453:757897757897758829933Bacillus amyloliquefaciens XH7 chromosome, complete genomeDNA-modified purine glycosidase5e-1788.6
NC_014551:809025:812537812537813400864Bacillus amyloliquefaciens DSM 7, complete genomeDNA-modified purine glycosidase4e-1788.6
NC_017188:753039:756552756552757415864Bacillus amyloliquefaciens TA208 chromosome, complete genomeDNA-modified purine glycosidase4e-1788.6
NC_013406:4323338:433824643382464339193948Paenibacillus sp. Y412MC10 chromosome, complete genomeDNA-3-methyladenine glycosylase II1e-1687.4
NC_015161:2018493:204527620452762045893618Deinococcus proteolyticus MRP chromosome, complete genomeHhH-GPD family protein9e-1580.9
NC_005126:142500:155440155440155682243Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1480.9
UCMB5137:409500:411192411192412184993Bacillus atrophaeus UCMB-5137putative DNA-modified purine glycosidase2e-1479.7
NC_010694:2565580:2588245258824525896961452Erwinia tasmaniensis, complete genomePutative DNA-3-methyladenine glycosidase II7e-1478.2
NC_020541:2487427:2507092250709225085971506Rhodanobacter sp. 2APBS1, complete genome3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase1e-1377.8
NC_012559:1663214:166557916655791666205627Laribacter hongkongensis HLHK9, complete genomeHhH-GPD family protein1e-1377.4
NC_016901:3430401:3432394343239434340911698Shewanella baltica OS678 chromosome, complete genomeAraC family transcriptional regulator2e-1376.6
NC_009997:3483157:3485150348515034868471698Shewanella baltica OS195, complete genometranscriptional regulator, AraC family2e-1376.6
NC_015942:403296:4036114036114050891479Acidithiobacillus ferrivorans SS3 chromosome, complete genomeAraC family DNA repair protein and transcriptional regulator4e-1375.9
NC_007651:72952:9058390583916141032Burkholderia thailandensis E264 chromosome I, complete sequenceDNA-3-methyladenine glycosylase II4e-1375.9
NC_020181:360500:360534360534361382849Enterobacter aerogenes EA1509E, complete genomeDNA-3-methyladenine glycosylase II6e-1375.1
NC_014121:3453815:345713334571333458005873Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3-methyl-adenine DNA glycosylase II1e-1273.9
NC_009076:106807:127526127526128440915Burkholderia pseudomallei 1106a chromosome I, complete sequenceDNA-3-methyladenine glycosylase 22e-1273.6
NC_009074:94000:114238114238115152915Burkholderia pseudomallei 668 chromosome I, complete sequenceDNA-3-methyladenine glycosylase II2e-1273.6
NC_019902:1061432:106569610656961066316621Thioalkalivibrio nitratireducens DSM 14787, complete genomeHhH-GPD base excision DNA repair family protein; Probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase4e-1272.4
NC_014376:3547218:356876135687613569378618Clostridium saccharolyticum WM1 chromosome, complete genomeHhH-GPD family protein1e-1170.9
NC_013967:2641433:264406526440652644646582Haloferax volcanii DS2 chromosome, complete genomeDNA-3-methyladenine glycosylase1e-1170.9
NC_014153:436082:453766453766454431666Thiomonas intermedia K12 chromosome, complete genomeHhH-GPD family protein2e-1170.1
NC_015968:3023048:302634230263423027214873Enterobacter asburiae LF7a chromosome, complete genomeAlkA domain-containing protein3e-1169.3
NC_013961:1246454:1247302124730212487531452Erwinia amylovora, complete genomeDNA methylation and regulatory protein3e-1169.3
NC_013971:1283942:1284790128479012862411452Erwinia amylovora ATCC 49946 chromosome, complete genomeadaptative response regulatory protein Ada5e-1168.6
NC_007963:3113739:3125240312524031266011362Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, AraC family7e-1168.2
NC_010084:1299387:132045413204541321335882Burkholderia multivorans ATCC 17616 chromosome 1, completeHhH-GPD family protein1e-1067.4
NC_006677:1052031:105441010544101055069660Gluconobacter oxydans 621H, complete genomeDNA-3-methyladenine glycosylase1e-1067.4
NC_013169:612456:645400645400646260861Kytococcus sedentarius DSM 20547, complete genome3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase1e-1067.4
NC_007347:1215358:121535812153581216128771Ralstonia eutropha JMP134 chromosome 1, complete sequenceHhH-GPD4e-1065.5
NC_010506:2146444:2167032216703221685371506Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, AraC family7e-1064.7
NC_014391:6000834:6021937602193760233881452Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeAlkA domain-containing protein1e-0963.9
NC_014924:2108116:2136546213654621380781533Pseudoxanthomonas suwonensis 11-1 chromosome, complete genometranscriptional regulator, AraC family2e-0963.5
NC_006932:1596732:161323216132321613891660Brucella abortus biovar 1 str. 9-941 chromosome I, completebase-excision DNA repair protein2e-0963.5
NC_003317:392271:392271392271392945675Brucella melitensis 16M chromosome I, complete sequenceDNA-3-METHYLADENINE GLYCOSIDASE2e-0963.2
NC_004310:1578918:159541615954161596114699Brucella suis 1330 chromosome I, complete sequencebase-excision DNA repair protein2e-0963.2
NC_010167:1085106:110341111034111104109699Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein2e-0963.2
NC_015857:1609670:162617016261701626868699Brucella pinnipedialis B2/94 chromosome chromosome 1, completebase-excision DNA repair protein2e-0963.2
NC_010103:1577750:159424915942491594947699Brucella canis ATCC 23365 chromosome I, complete sequenceHhH-GPD family protein2e-0963.2
NC_007618:1593886:161038816103881611086699Brucella melitensis biovar Abortus 2308 chromosome I, completeHhH-GPD2e-0963.2
NC_010742:1595065:161156516115651612263699Brucella abortus S19 chromosome 1, complete sequenceHhH-GPD2e-0963.2
NC_003106:1065476:107637910763791077227849Sulfolobus tokodaii str. 7, complete genomehypothetical protein3e-0962.8
NC_001263:2574755:259259325925932593270678Deinococcus radiodurans R1 chromosome 1, complete sequenceDNA-3-methyladenine glycosidase II, putative6e-0961.6
NC_012108:3965433:3965671396567139667321062Desulfobacterium autotrophicum HRM2, complete genomeAlkA9e-0961.2
NC_016012:16134:308023080231470669Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeDNA-3-methyladenine glycosylase II1e-0860.8
NC_010162:10962500:109636641096366410964542879Sorangium cellulosum 'So ce 56', complete genomeputative DNA-3-methyladenine glycosidase1e-0860.8
NC_013947:3347174:3371396337139633728891494Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, AraC family1e-0860.8
NC_015850:1947000:196800819680081968949942Acidithiobacillus caldus SM-1 chromosome, complete genomeDNA-3-methyladenine glycosylase II2e-0860.1
NC_007974:138176:157294157294157950657Ralstonia metallidurans CH34 chromosome 2, complete sequenceHhH-GPD2e-0756.6
NC_009937:412302:425901425901426554654Azorhizobium caulinodans ORS 571, complete genomeHhH-GPD protein3e-0756.2
NC_015138:3160764:317863731786373179296660Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeHhH-GPD family protein3e-0756.2
NC_014221:38000:523805238053330951Truepera radiovictrix DSM 17093 chromosome, complete genomeDNA-3-methyladenine glycosylase II3e-0756.2
NC_014318:7821227:782122778212277822132906Amycolatopsis mediterranei U32 chromosome, complete genomeDNA-3-methyladenine glycosylase II3e-0652.8
NC_015224:2017781:202620320262032026805603Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative glycosidase6e-0651.6