Pre_GI: BLASTP Hits

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Query: NC_005126:1223042:1243690 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1243690, End: 1244427, Length: 738

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:316340:329606329606330316711Serratia sp. AS12 chromosome, complete genomeintegrating conjugative element protein1e-72273
NC_015567:313035:329771329771330481711Serratia sp. AS9 chromosome, complete genomeintegrating conjugative element protein1e-72273
NC_014029:331919:359793359793360503711Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-72271
NC_009832:358291:375152375152375862711Serratia proteamaculans 568, complete genomehypothetical protein6e-72270
NC_013892:1483000:149761214976121498307696Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-67254
NC_004547:611178:623308623308624021714Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein7e-67253
NC_014228:3391500:342173034217303422425696Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-66251
NC_013892:3278647:329886132988613299559699Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-65248
NC_009708:4182460:419880341988034199621819Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein8e-65246
NC_016845:4539381:454257545425754543192618Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-62238
NC_012731:600518:618067618067618741675Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein5e-51201
NC_013716:3512950:354341635434163544066651Citrobacter rodentium ICC168, complete genomeputative conjugative transfer system protein TraG7e-46183
NC_020181:3328844:334448433444843345134651Enterobacter aerogenes EA1509E, complete genomeFIG00509784: hypothetical protein8e-46183
NC_007005:1636875:164416916441691644915747Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein1e-45183
NC_016830:3869572:392636039263603927079720Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein3e-44178
NC_008752:558828:573957573957574715759Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein1e-43176
NC_012691:2614603:265614726561472656875729Tolumonas auensis DSM 9187, complete genomeputative secreted protein5e-42171
NC_003919:2639080:263833126383312639095765Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein5e-41167
NC_018080:5091772:515204751520475152802756Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-40165
NC_010170:1498253:153197015319701532689720Bordetella petrii, complete genomeconserved protein, putatively exported7e-40164
NC_006513:1379735:146021714602171460954738Azoarcus sp. EbN1, complete genomehypothetical protein7e-40164
NC_009656:4527457:462704246270424627794753Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-39163
NC_012912:483390:516548516548517255708Dickeya zeae Ech1591, complete genomeputative secreted protein1e-39162
NC_010002:4544818:455892545589254559662738Delftia acidovorans SPH-1, complete genomeputative secreted protein1e-38159
NC_010170:4533416:453673745367374537474738Bordetella petrii, complete genomeconserved protein, putatively exported1e-38159
NC_009138:1974935:201147420114742012199726Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein; putative signal peptide3e-38158
NC_008782:2326439:234563123456312346350720Acidovorax sp. JS42, complete genomeputative secreted protein7e-37154
NC_015422:1876102:187539818753981876117720Alicycliphilus denitrificans K601 chromosome, complete genomeintegrating conjugative element protein2e-36152
NC_008825:2525380:254304225430422543761720Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-36152
NC_008344:49039:975669756698294729Nitrosomonas eutropha C91, complete genomehypothetical protein4e-36151
NC_011662:1058794:106209410620941062813720Thauera sp. MZ1T, complete genomehypothetical protein3e-36151
NC_015379:2417312:245149924514992452218720Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Conserved hypothetical protein; putative exported protein2e-35149
NC_004129:5373886:542344454234445424187744Pseudomonas fluorescens Pf-5, complete genomehypothetical protein3e-34145
NC_014532:3555550:357296335729633573721759Halomonas elongata DSM 2581, complete genomehypothetical protein6e-34144
NC_011992:1234610:123735312373531238078726Acidovorax ebreus TPSY, complete genomeputative secreted protein2e-33142
NC_007484:667879:676468676468677286819Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein1e-28127
NC_015572:2186394:219760721976072198383777Methylomonas methanica MC09 chromosome, complete genomeintegrating conjugative element protein2e-26119
NC_008739:41793:417934179342569777Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequencehypothetical protein3e-1995.5