Pre_GI: BLASTP Hits

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Query: NC_004741:310382:334021 Shigella flexneri 2a str. 2457T, complete genome

Start: 334021, End: 334599, Length: 579

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:309833:334887334887335465579Shigella flexneri 2a str. 301, complete genomehypothetical protein6e-104376
NC_012880:3748665:376356637635663764015450Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF1881e-56219
NC_008800:1300500:130669413066941307152459Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-55214
NC_009708:1497898:150059915005991501057459Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein7e-55213
NC_006155:3237990:325410332541033254561459Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein7e-55213
NC_010634:3155741:317189531718953172353459Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein7e-55213
NC_016026:1969766:199715919971591997611453Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein9e-35146
NC_014310:1750817:176460217646021765084483Ralstonia solanacearum PSI07 megaplasmid, complete sequencehypothetical protein5e-34143
NC_002939:173833:187341187341187796456Geobacter sulfurreducens PCA, complete genomeYaiI/YqxD family protein5e-30130
NC_015580:1745918:176138517613851761837453Novosphingobium sp. PP1Y, complete genomehypothetical protein2e-1789
NC_004193:375416:480995480995481435441Oceanobacillus iheyensis HTE831, complete genomehypothetical protein5e-1374.3
NC_015391:2059191:206538620653862065829444Carnobacterium sp. 17-4 chromosome, complete genomehypothetical protein4e-1064.7
NC_006322:2592176:261048026104802610971492Bacillus licheniformis ATCC 14580, complete genomeYqxD1e-0962.8
NC_006270:2591317:260962126096212610112492Bacillus licheniformis ATCC 14580, complete genomeconserved protein YqxD1e-0962.8
NC_016048:2907702:292456329245632925030468Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein6e-0753.9