Pre_GI: BLASTP Hits

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Query: NC_004741:2593012:2601934 Shigella flexneri 2a str. 2457T, complete genome

Start: 2601934, End: 2602158, Length: 225

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017171:280762:289900289900290340441Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomehypothetical protein4e-37153
NC_011092:76993:791757917579399225Salmonella enterica subsp. enterica serovar Schwarzengrund str1e-36151
NC_008344:669498:675395675395675619225Nitrosomonas eutropha C91, complete genomehypothetical protein1e-36151
NC_008344:2374761:238964123896412389865225Nitrosomonas eutropha C91, complete genomehypothetical protein1e-36151
NC_009651:19909:216132161321777165Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,hypothetical protein1e-24111
NC_008782:2683989:268927326892732689470198Acidovorax sp. JS42, complete genomehypothetical protein2e-0857.8