Pre_GI: BLASTP Hits

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Query: NC_004741:2593012:2597375 Shigella flexneri 2a str. 2457T, complete genome

Start: 2597375, End: 2597893, Length: 519

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:2651730:265173026517302652245516Escherichia coli HS, complete genomesurface antigen family protein2e-67254
NC_011601:2806392:281107228110722811587516Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeouter membrane lipoprotein4e-67253
NC_012779:3176820:318544331854433185895453Edwardsiella ictaluri 93-146, complete genomehypothetical protein3e-33140