Pre_GI: BLASTP Hits

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Query: NC_004605:741000:741193 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 741193, End: 741939, Length: 747

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005139:2201820:223586422358642236619756Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein2e-42172
NC_004603:370320:377275377275378027753Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-33141
NC_012438:192065:2034542034542053701917Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomediguanylate cyclase/phosphodiesterase2e-0859.7
NC_016514:1183356:1191269119126911932121944Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YciR2e-0859.7
NC_010172:3712000:3717390371739037193932004Methylobacterium extorquens PA1, complete genomediguanylate cyclase4e-0755.1
NC_012988:4075429:4083312408331240853392028Methylobacterium extorquens DM4, complete genomediguanylate cyclase5e-0755.1
NC_017192:1137724:1153417115341711559092493Arcobacter sp. L, complete genomeEAL/GGDEF/PAS domain-containing protein9e-0650.8
NC_009436:1679265:1687154168715416890821929Enterobacter sp. 638, complete genomediguanylate cyclase/phosphodiesterase9e-0650.8