Pre_GI: BLASTP Hits

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Query: NC_004603:230000:254613 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 254613, End: 254960, Length: 348

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009783:670449:702536702536702883348Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein4e-55213
NC_014834:2641514:264438326443832644730348Rhodopseudomonas palustris DX-1 chromosome, complete genome5-carboxymethyl-2-hydroxymuconate isomerase9e-1579
NC_007778:2875973:288195928819592882306348Rhodopseudomonas palustris HaA2, complete genome5-carboxymethyl-2-hydroxymuconate delta isomerase1e-1375.5
NC_017249:2109843:213547021354702135877408Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-1166.6
NC_014323:292958:306446306446306805360Herbaspirillum seropedicae SmR1 chromosome, complete genome5-carboxymethyl-2-hydroxymuconate delta-isomerase3e-0960.5
NC_016613:1960811:196426819642681964603336Vibrio sp. EJY3 chromosome 1, complete sequence5-carboxymethyl-2-hydroxymuconate isomerase2e-0857.8
NC_016830:1645879:166589016658901666255366Pseudomonas fluorescens F113 chromosome, complete genomeputative 5-carboxymethyl-2-hydroxymuconate delta isomerase6e-0856.2
NC_012962:1068102:107080010708001071186387Photorhabdus asymbiotica, complete genome5-carboxymethyl-2-hydroxymuconate isomerase1e-0755.1